To counteract an increasing biodiversity decline, parks and protected areas have been established worldwide. However, many parks lack adequate management to address environmental degradation. To improve management strategies simple tools are needed for an assessment of human impact and management effectiveness of protected areas. This study quantifies the current threats in the heavily fragmented and degraded tropical rainforest of Kakamega, western Kenya. We recorded seven disturbance parameters at 22 sites in differently managed and protected areas of Kakamega Forest. Our data indicate a high level of human impact throughout the forest with illegal logging being most widespread. Furthermore, logging levels appear to reflect management history and effectiveness. From 1933 to 1986, Kakamega Forest was under management by the Forest Department and the number of trees logged more than 20 years ago was equally high at all sites. Since 1986, management of Kakamega Forest has been under two different organizations, i.e. Forest Department and Kenya Wildlife Service. The number of trees logged illegally in the last 20 years was significantly lower at sites managed by the Kenya Wildlife Service. Finally, logging was lower within highly protected National and Nature Reserves as compared to high logging within the less protected Forest Reserves. Reflecting management effectiveness as well as protection status in Kakamega Forest, logging might therefore provide a valuable quantitative indicator for human disturbance and thus an important tool for conservation managers. Logging might be a valuable indicator for other protected areas, too, however, other human impact such as e.g. hunting might also prove to be a potential indicator.