There are provisions for accommodating Internally Displaced Persons (IDPs) in NorthEast Nigeria. However, there are some challenges in the camps where these IDPs are accommodated. They include issues such as killings, kidnappings, stealing, rapes, and shortage of food and diversion of relief materials, among others. These challenges have made life difficult for the IDPs, donor agencies and the government at large in managing and securing the camps with respect to security provision and the distribution of relief materials to the IDPs. This study notes that the existing manual method of keeping records of IDPs in the camps is tedious and allows insecurity and improper documentation. A web-based application which provides a means of ensuring adequate documentation of IDPs by capturing the necessary data to ensure the proper identification and accounting of the IDPs is developed. Also, the use of fingerprint identification system which is a form of biometric identification is embedded in this application. The application utilizes a portable fingerprint scanner as its input in acquiring fingerprints of the IDPs. It verifies the fingerprint by displaying the associated image and other personal details of the internally displaced person. The system is also capable of querying the database for the IDPs. The system was developed using PHP, CSS, JAVA and MYSQL. Object Oriented Analysis and Design Methodology (OOADM) was used to analyze the system and Unified Modeling Language (UML) was used to model the software. The information generated from the enrollment and biometric capturing of IDPs will effectively verify and identify the IDPs. This developed system will be used to enhance the security, the distribution of relief materials, and the managing of IDPs in the camps.