Accurate approach to capillary-supported optical diffraction tomography

Kostencka, Julianna; Kozacki, Tomasz; Kuś, Arkadiusz; Kujawińska, Małgorzata

doi:10.1364/oe.23.007908

Cited by 37 publications

(21 citation statements)

References 25 publications

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“…Mechanical rotation of samples, however, limits data acquisition speed. Also, perturbation occurred during mechanical rotation, called radial run-out [32], and field distortion due to the refraction from the cylindrical microcapillary require additional numerical correcting algorithms [33]. More importantly, the sample rotation method can cause deformation of live biological cells because of the viscoelasticity of cells, possibly resulting in artifacts in reconstructed tomograms.…”

Section: Sample Rotation Odtmentioning

confidence: 99%

Optical diffraction tomography techniques for the study of cell pathophysiology

Yoon

Shin

et al. 2016

JBPE

151

163

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Abstract. Three-dimensional imaging of biological cells is crucial for the investigation of cell biology, providing valuable information to reveal the mechanisms behind pathophysiology of cells and tissues. Recent advances in optical diffraction tomography (ODT) have demonstrated the potential for the study of various cells with its unique advantages of quantitative and label-free imaging capability. To provide insight on this rapidly growing field of research and to discuss its applications in biology and medicine, we present the summary of the ODT principle and highlight recent studies utilizing ODT with the emphasis on the applications to the pathophysiology of cells. Stephens, and V. J. Allan, "Light microscopy techniques for live cell Imaging," Science 300, 82-86 (2003). 2. M. Minsky, "Microscopy apparatus," US 3, 013,467 (Dec. 19 1961). 3. W. Denk, J. P. Strickler, and W. W. Webb, "Two-photon laser microscopy," US 5,034,613 (Jul. 23 1991). 4. B. Huang, M. Bates, and X. Zhuang, "Super resolution fluorescence microscopy," Annual Review of Biochemistry 78, 993-1016Biochemistry 78, 993- (2009. 5. E. Wolf, "Three-dimensional structure determination of semi-transparent objects from holographic data,"Optics Communications 1, 153-156 (1969). 6. R. Dändliker, and K. Weiss, "Reconstruction of the three-dimensional refractive index from scattered waves,"Optics Communications 1(7), 323-328 (1970 2427-2439 (1979). 8. N. Streibl, "Three-dimensional imaging by a microscope," Journal of the Optical Society of America A 2(2), 121-127 (1985). 9. S. Kawata, O. Nakamura, and S. Minami, "Optical Microscope Tomography .1. Support Constraint," Journal of the Optical Society of America A 4(1), 292-297 (1987). 10. T. Noda, S. Kawata, and S. Minami, "Three-dimensional phase contrast imaging by an annular illumination microscope," Applied Optics 29(26), 3810-3815 (1990). 11. A. J. Devaney, and A. Schatzberg, "Coherent optical tomographic microscope," Proc. of SPIE 1767SPIE , 62-71 (1992. 12. G. Vishnyakov and G. Levin, "Optical microtomography of phase objects," Optics and Spectroscopy 85(1), 73-77 (1998 tomography with a low-coherence illumination for reducing speckle noise," Proc. of SPIE 9336, 933629 (2015).

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Section: Sample Rotation Odtmentioning

confidence: 99%

Optical diffraction tomography techniques for the study of cell pathophysiology

Yoon

Shin

et al. 2016

JBPE

151

163

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“…The high potential of HT is widely appreciated in life sciences and biomedicine, where it is used for minimally invasive 3D imaging of unstained, living, cellular specimens [1][2][3][4][5]. However, to enable the study of sensitive biological materials, originally proposed HT technique applying the object rotation configuration (ORC) [2,[5][6][7][8][9][10] had to be modified to minimize the risk of damaging a sample. Currently, with a few exceptions [5][6][7], the biomedical-oriented HT systems utilize a tomographic concept in which physical manipulation of a sample is completely eliminated.…”

Section: Introductionmentioning

confidence: 99%

“…However, to enable the study of sensitive biological materials, originally proposed HT technique applying the object rotation configuration (ORC) [2,[5][6][7][8][9][10] had to be modified to minimize the risk of damaging a sample. Currently, with a few exceptions [5][6][7], the biomedical-oriented HT systems utilize a tomographic concept in which physical manipulation of a sample is completely eliminated. In those systems different sample projections are achieved by scanning an illumination beam, while keeping a sample and a detector fixed [1][2][3][4].…”

Section: Introductionmentioning

confidence: 99%

Holographic tomography with scanning of illumination: space-domain reconstruction for spatially invariant accuracy

Kostencka¹,

Kozacki²,

Kuś³

et al. 2016

Biomed. Opt. Express

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Abstract:The paper presents two novel, space-domain reconstruction algorithms for holographic tomography utilizing scanning of illumination and a fixed detector that is highly suitable for imaging of living biomedical specimens. The first proposed algorithm is an adaptation of the filtered backpropagation to the scanning illumination tomography. Its spacedomain implementation enables avoiding the error-prone interpolation in the Fourier domain, which is a significant problem of the state-of-the-art tomographic algorithm. The second proposed algorithm is a modified version of the former, which ensures the spatially invariant reconstruction accuracy. The utility of the proposed algorithms is demonstrated with numerical simulations and experimental measurement of a cancer cell.

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“…Moreover, relatively long data acquisition time prohibits application of ORC-HT to investigation of dynamic processes. Lastly, the ORC systems require direct [1][2][3] or indirect [5,14,15] physical manipulation of a specimen, which poses a risk of disturbing or even damaging a sample. These issues are particularly troublesome for biomedical-oriented studies, especially for investigation of living biological specimens.…”

Section: Introductionmentioning

confidence: 99%

Space-domain, filtered backpropagation algorithm for tomographic configuration with scanning of illumination

Kostencka

Kozacki

2016

SPIE Proceedings

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Filtered backpropagation (FBPP) is a well-established reconstruction technique that is used in diffractive holographic tomography. The great advantage of the algorithm is the space-domain implementation, which enables avoiding the error-prone interpolation in the spectral domain that is an inherent part of the main counterpart of FBPP -the direct inversion tomographic reconstruction method. However, the fundamental flaw of FBPP is lack of generality, i.e. the method can be applied solely for the classical tomographic systems, where alternation of the measurement views is achieved by rotating a sample. At the same time, majority of the nowadays tomographic setups apply an alternative measurement concept, which is based on scanning of an illumination beam. The aim of this paper is to remove the mentioned limitation of the FBPP and enable its application in the systems utilizing scanning of illumination. This is achieved by introducing a new method of accounting for uneven cover of the sampled object frequencies, which applies normalization of the object spectrum with coherent transfer function of a considered tomographic system. The feasibility of the proposed, modified filtered backpropagation algorithm is demonstrated with numerical simulations, which mimic tomographic measurement of a complex sample, i.e. the Shepp-Logan phantom.

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Accurate approach to capillary-supported optical diffraction tomography

Cited by 37 publications

References 25 publications

Optical diffraction tomography techniques for the study of cell pathophysiology

Optical diffraction tomography techniques for the study of cell pathophysiology

Holographic tomography with scanning of illumination: space-domain reconstruction for spatially invariant accuracy

Space-domain, filtered backpropagation algorithm for tomographic configuration with scanning of illumination

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