In recent years, there has been significant interest in information-theoretic security techniques that encrypt physical layer signals. We have proposed chaos modulation, which has both physical layer security and channel coding gain, as one such technique. In the chaos modulation method, the channel coding gain can be increased using a turbo mechanism that exchanges the log-likelihood ratio (LLR) with an external concatenated code using the max-log approximation. However, chaos modulation, which is a type of Gaussian modulation, does not use fixed mapping, and the distance between signal points is not constant; therefore, the accuracy of the max-log approximated LLR degrades under poor channel conditions. As a result, conventional methods suffer from performance degradation owing to error propagation in turbo decoding. Therefore, in this paper, we propose a new LLR clipping method that can be optimally applied to chaos modulation by limiting the confidence level of LLR and suppressing error propagation. For effective clipping on chaos modulation that does not have fixed mappings, the average confidence value is obtained from the extrinsic LLR calculated from the demodulator and decoder, and clipping is performed based on this value, either in the demodulator or the decoder. Numerical results indicated that the proposed method achieves the same performance as the one using the exact LLR, which requires complicated calculations. Furthermore, the security feature of the proposed system is evaluated, and we observe that sufficient security is provided.