This investigation focuses on the effects on emissions of persistent organic pollutants (POPs) (polychlorinated dibenzop-dioxins and dibenzofurans (PCDD/Fs), polychlorinated biphenyls (PCBs), polybrominated dibenzo-p-dioxins and dibenzofurans (PBDD/Fs) and polybrominated diphenyl ethers (PBDEs)) from a diesel engine fuelled by 20 vol% waste cooking oil-based biodiesel (W20) blended with various fractions of dehydrate/hydrous butanol (B/B′) and acetone (A/A′). The emission concentrations of the POPs were in the order PBDE ≫ PBDD/F > PCB > PCDD/F, regardless of the blending fuel or engine load. The POP with highest concentration was PBDE, being 2-3 times that of the others. Conversely, the magnitude of emitted toxicity followed the order PCDD/F > PCB ≈ PBDD/F, while PCDD/F emissions had about 10 times the toxicity concentrations of PCBs and PBDD/Fs. Among the dioxin compounds, the emissions of PCDDs represented 46-73% (average 57%) and 50-72% (average 59%) of total PCDD/F mass and toxicity concentrations, respectively, and were which and were thus significantly higher than those of PCDFs. The non-ortho-PCB contributed almost all toxicity (~100%) of 14 dioxin-like-PCBs, even though its contribution in mass was only 9-32% (average 16%) among the congeners. Similarly, PBDFs accounted for ~100% of toxicity of PBDD/Fs. Additionally, deca-BDEs contributed to most of the mass emissions of PBDEs (47.0-90.5%, 82.4% in average), while nona-BDEs and tri-to octaBDEs only contributed 10% and 8%, respectively. The reductions of the absolute mass concentrations of POPs from W20 were in the order PBDEs >> PBDD/Fs > PCDD/Fs ≈ PCBs for all multi-component diesel blends. The reduction fractions of POPs were in the order PCDD/F > PCB ≈ PBDD/F > PBDE, and those of TEQ were PCDD/F > PCB > PBDD/F. Thus, the addition of butanol and acetone, whether pure or hydrous, could further lower the POP emissions from W20.