Bacteria such as Escherichia coli are frequently grown to high density to produce biomolecules for study in the laboratory. To achieve this, cells can be incubated in extremely rich media that increase overall cell yield. In these various media, bacteria may have different metabolic profiles, leading to changes in the amounts of toxic metabolites produced. We have previously shown that stresses experienced during short-term growth can affect the survival of cells during the long-term stationary phase (LTSP). Here, we incubated cells in LB, 2؋ yeast extract-tryptone (YT), Terrific Broth, or Super Broth medium and monitored survival during the LTSP, as well as other reporters of genetic and physiological change. We observe differential cell yield and survival in all media studied. We propose that differences in long-term survival are the result of changes in the metabolism of components of the media that may lead to increased levels of protein and/or DNA damage. We also show that culture pH and levels of protein glycation, a covalent modification that causes protein damage, affect long-term survival. Further, we measured mutation frequency after overnight incubation and observed a correlation between high mutation frequencies at the end of the log phase and loss of viability after 4 days of LTSP incubation, indicating that mutation frequency is potentially predictive of long-term survival. Since glycation and mutation can be caused by oxidative stress, we measured expression of the oxyR oxidative stress regulator during log-phase growth and found that higher levels of oxyR expression during the log phase are consistent with high mutation frequency and lower cell density during the LTSP. Since these complex rich media are often used when producing large quantities of biomolecules in the laboratory, the observed increase in damage resulting in glycation or mutation may lead to production of a heterogeneous population of plasmids or proteins, which could affect the quality of the end products yielded in some laboratory experiments. E scherichia coli is often used both as a model organism to understand fundamental biological process and as a tool to produce biomolecules, including plasmids and proteins. While many of these applications require relatively short periods of incubation, the E. coli life cycle in batch culture in the laboratory can last for extended periods and include five phases. During the first phase after inoculation into fresh medium, termed the "lag phase," cells are adjusting their metabolism to the new, nutrientrich environment, with little cell division. During the second phase, called the "exponential phase" or "logarithmic phase," cells are replicating at a relatively rapid and constant rate, which can be as fast as 1 cell division every 20 min for many E. coli strains (1). This is followed by the "stationary phase," where cell density ceases to increase, most likely due to some combination of a reduction in available nutrients, a buildup of metabolic wastes or toxins, and/or signals to cease g...