Aptamers are small biomolecules
composed of 20–100 nucleotides that recognize target molecules
in three-dimensional structures. These natural targeting molecules
have attracted interest in the biomedical field as biomarkers for
cancer diagnostics. In this study, we investigated the interaction
of a characteristic aptamer with its target protein, Cu, Zn superoxide
dismutase (SOD 4), on a gold nanoparticle (AuNP) surface under experimental
conditions. For this purpose, we applied two protocols to coat SOD
4 aptamer (APT) on the nanoparticle surface: carbodiimide chemistry
(EDC/NHS) (Method ON) and a complexation methodology (Method IN).
The nano-aptamer’s interactions with SOD 4 were detected by
UV–vis absorption and Raman spectroscopy in a range of protein
concentrations (from 1 μM to 50 nM). We believe that the interaction
is heavily dependent on the nature of the biomarker (SOD 4) and also
on the steric arrangement of the aptamer on the gold nanoparticle
surface. The lowest detectable concentration (limit of detection,
LOD) was about 2 nM for APT IN PEG-AuNPs and 8 nM for APT ON PEG-AuNPs.
For the first time, we demonstrated a very sensitive detection of
SOD 4 in the nanomolar concentration range with new ways of biosensor
synthesis (APT IN and ON), providing a very strong tool to understand
the effect of aptamer conformation to detect SOD 4.