The superlattices phase‐change memory (SL‐PCM), based on GeTe/Sb2Te3 superlattices (SLs), garners considerable attention within the academic community owing to its exceptional electrical properties. While the exact mechanism remains a topic of ongoing debate, researchers widely acknowledge that the presence of van der Waals (vdW) gap structures within SLs plays a pivotal role. However, the formation of vertical nanoparticles (VNPs) from the random orientation of Sb2Te3 and the substantial intermixing between GeTe and Sb2Te3 due to high‐temperature fabrication processes leads to pronounced elemental intermixing during electrical operations, causing a loss of SLs properties. This investigation uses atomic layer deposition techniques, specifically Sb‐atomic seed layer and periodic quintuple layers stacking, to address issues from random orientation Sb2Te3 grains and anomalous VNPs. This approach yields Sb2Te3 crystalline films with a high‐stability vdW gap structures. By leveraging these films, SLs with a preferred crystallographic orientation at a notable low temperature of 90 °C are successfully fabricated. The optimized SLs exhibit remarkable structural stability and mitigate alloy phase emergence during electrical operations, resulting in a 100‐fold enhancement in device durability. This work advances reliable SL‐PCM understanding and implementation, propelling this memory technology into the next generation.