Shewanella putrefaciens is a typical
spoiler that
is commonly found in seafood and has high spoilage potential. However,
the spoilage mechanism against Shewanella putrefaciens at the gene and metabolism levels has not been well elucidated.
This work determined the spoilage targets on Shewanella putrefaciens XY07 from spoiled bigeye tuna by genome sequencing, metabolomics,
and Fourier transform infrared (FTIR) analysis. Shewanella
putrefaciens XY07 contained some genes on spoilage regulating
of cys genes, his genes, spe genes and rpoS gene involved in sulfur
metabolism, histidine metabolism, arginine and proline degradation,
and biofilm formation at the genome level, respectively. Some spoilage
genes like speC, cysM, trxB genes were identified.
In addition, ABC transporters, arginine and proline metabolism; beta-alanine
metabolism; glycine, serine, and threonine metabolism; histidine metabolism;
sulfur metabolism; and lipid metabolism were identified as important
pathways related to aquatic food during spoilage, which indicated
the functions of amino acid degradation in S. putrefaciens XY 07 by metabolomics analysis. The metabolites of l-ornithine,
5-aminopentanoate, and 4-aminobutyraldehyde could be further metabolized
to spermidine and spermine, producing a spoilage odor, and were involved
in arginine and proline metabolism serving as key spoilage regulating
metabolisms. Therefore, Shewanella putrefaciens XY07
was applied to genomics, metabolomics analysis, and FTIR to provide
comprehensive insight into the investigation of spoilage targets.