“…The nuclei were collected by centrifugation through 4 ml of cold sucrose cushion (30% sucrose, 10 mM Tris-HCl, pH 7.5, 10 mM NaCl, 3 mM MgCl 2 ) at 1300 g for 10 minutes at 4°C, resuspended in 400 l 10 mM Tris-HCl, pH 7.4, 10 mM NaCl, and centrifuged at 1300 g for 10 minutes at 4°C. Nuclear pellets were resuspended in 50 ml 1.5ϫ RIPA buffer (80 mM Tris-HCl, pH 7.5, 800 mM NaCl, 0.4% deoxycholic acid, 1.6% NP-40, 1.6 mM EDTA), incubated on ice for 30 minutes, and centrifuged at 10,000 g for 10 minutes at 4°C (modified from Di Renzo et al, 2007). The supernatant, containing nuclear proteins, was stored in aliquots at -80°C until use.…”