A charge bunch moving in a plasma can excite a variety of linear and nonlinear waves in the form of trailing wakes, fore-wake shocks and precursor solitons. These structures can further interact with the background plasma to create secondary effects that can serve as signatures of the passage of the charge bunch. Using particlein-cell simulations we investigate in detail the dynamics of a plasma system that is being traversed by an energetic charged ion bunch. Using two different shapes of the charge source, namely, an idealized one dimensional line source and a two dimensional thin rectangular source we examine the differences in the nature of the excited wave structures and their consequent impact on the background plasma. Our simulations reveal interesting features such as the dependence of the precursor speeds on the total charge of the ion bunch, local particle trapping, and energization of the trapped ions in various regions along the traversal path leading to the formation of energetic ion beam-lets. The collective excitations and the signatures in the ambient plasma could prove useful in practical applications such as in ion beam heating of plasmas. They can also help in analysing the trajectories of charged objects like space debris orbiting in the ionosphere. ‡ This manuscript has been authored by UT-Battelle, LLC, under contract DE-AC05-00OR22725 with the US Department of Energy (DOE). The US government retains and the publisher, by accepting the article for publication, acknowledges that the US government retains a nonexclusive, paid-up, irrevocable, worldwide license to publish or reproduce the published form of this manuscript, or allow others to do so, for US government purposes. DOE will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan (http://energy.gov/downloads/doe-public-access-plan).