CannabisGDB: a comprehensive genomic database for <i>Cannabis Sativa</i> L

Cai, Sen; Zhang, Zhiyuan; Huang, Su‐Yun; Xu, Bin; Huang, Ziying; Zhang, Yiping Jason; Huang, Likun; Tang, Weiqi; Haughn, George W.; You, Shijun; Liu, Yuanyuan

doi:10.1111/pbi.13548

Cited by 23 publications

(11 citation statements)

References 10 publications

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“…Metabolomes are quite similar to phenotypes and thus can provide detailed information about the intracellular activities regulated by metabolites. Therefore, metabolomics has been widely used in model plants and crops, such as A. thaliana [ 28 – 30 ], rice [ 31 – 33 ], soybean [ 34 , 35 ] and many other medical plants [ 36 – 38 ].…”

Section: Introductionmentioning

confidence: 99%

Combined transcriptomic and metabolomic analysis reveals the potential mechanism of seed germination and young seedling growth in Tamarix hispida

et al. 2022

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Background Seed germination is a series of ordered physiological and morphogenetic processes and a critical stage in plant life cycle. Tamarix hispida is one of the most salt-tolerant plant species; however, its seed germination has not been analysed using combined transcriptomics and metabolomics. Results Transcriptomic sequencing and widely targeted metabolomics were used to detect the transcriptional metabolic profiles of T. hispida at different stages of seed germination and young seedling growth. Transcriptomics showed that 46,538 genes were significantly altered throughout the studied development period. Enrichment study revealed that plant hormones, such as auxin, ABA, JA and SA played differential roles at varying stages of seed germination and post-germination. Metabolomics detected 1022 metabolites, with flavonoids accounting for the highest proportion of differential metabolites. Combined analysis indicated that flavonoid biosynthesis in young seedling growth, such as rhoifolin and quercetin, may improve the plant’s adaptative ability to extreme desert environments. Conclusions The differential regulation of plant hormones and the accumulation of flavonoids may be important for the seed germination survival of T. hispida in response to salt or arid deserts. This study enhanced the understanding of the overall mechanism in seed germination and post-germination. The results provide guidance for the ecological value and young seedling growth of T. hispida.

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Section: Introductionmentioning

confidence: 99%

Combined transcriptomic and metabolomic analysis reveals the potential mechanism of seed germination and young seedling growth in Tamarix hispida

et al. 2022

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“…With legalization, isolated cannabinoids are now legal for development as medicinal and edible products. To date, >115 unique cannabinoids (e.g., cannabidiol (CBD), cannabichromene (CBC), and cannabigerol (CBG)) with potential medicinal applications (Martínez et al, 2020) and >560 D r a f t secondary metabolites have been identified in cannabis (Zager et al, 2019;Hesami et al, 2020;Cai et al, 2021;Balant et al, 2021). The cannabis market is exponentially growing.…”

Section: Cannabis: An Increasingly Popular Cropmentioning

confidence: 99%

Cannabis, the multibillion dollar plant that no genebank wanted

Torkamaneh

Jones

2022

Genome

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Although cannabis is legalized and accepted as an agricultural commodity in many places around the world, a significant lack of public germplasm repositories remains an unresolved problem in the cannabis industry. The acquisition, preservation and evaluation of germplasm including landraces and ancestral populations is key to unleash the full potential of cannabis in the global marketplace. We argue here that accessible germplasm resources are crucial for long-term economic viability, preserving genetic diversity, breeding, innovation, and the long-term sustainability of the crop. We believe that cannabis restrictions require a second look to allow genebanks to play a fuller and more effective role in conservation, sustainable use, and exchange of cannabis genetic resources.

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“…Finally, in 2021, the first-ever open-access and comprehensive database of cannabis genome CannabisGDB (https://gdb.supercann. net/) were released (Cai et al, 2021) with integrated bioinformatic tools for the analysis of datasets.…”

Section: Developments In Cannabis Genomicsmentioning

confidence: 99%