Characterization of candidate genes involved in growth of black tiger shrimp Penaeus monodon

Tangprasittipap, Amornrat; Tiensuwan, Montip; Withyachumnarnkul, Boonsirm

doi:10.1016/j.aquaculture.2010.07.008

Cited by 18 publications

(24 citation statements)

References 44 publications

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“…monodon , Tangprasittipap et al . () reported a negative correlation between cyclophilin‐like expression and individual body weight. In a study of expression profiles in two size classes of Atlantic pink shrimp ( Farfantepenaeus paulensis ), cyclophilin, haemocyanin and myosin were strongly expressed in high weight individuals but were only weakly expressed or absent in low weight individuals (Kamimura et al .…”

Section: Candidate Genes Correlated With Growthmentioning

confidence: 96%

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Genes and growth performance in crustacean species: a review of relevant genomic studies in crustaceans and other taxa

Jung

Lyons

Hurwood

et al. 2013

Reviews in Aquaculture

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Global aquaculture has expanded rapidly to address the increasing demand for aquatic protein needs and an uncertain future for wild fisheries. To date, however, most farmed aquatic stocks are essentially wild and little is known about their genomes or the genes that affect important economic traits in culture. Biologists have recognized that recent technological advances including next generation sequencing (NGS) have opened up the possibility of generating genome wide sequence data sets rapidly from non‐model organisms at a reasonable cost. In an era when virtually any study organism can ‘go genomic’, understanding gene function and genetic effects on expressed quantitative trait locus phenotypes will be fundamental to future knowledge development. Many factors can influence the individual growth rate in target species but of particular importance in agriculture and aquaculture will be the identification and characterization of the specific gene loci that contribute important phenotypic variation to growth because the information can be applied to speed up genetic improvement programmes and to increase productivity via marker‐assisted selection (MAS). While currently there is only limited genomic information available for any crustacean species, a number of putative candidate genes have been identified or implicated in growth and muscle development in some species. In an effort to stimulate increased research on the identification of growth‐related genes in crustacean species, here we review the available information on: (i) associations between genes and growth reported in crustaceans, (ii) growth‐related genes involved with moulting, (iii) muscle development and degradation genes involved in moulting and (iv) correlations between DNA sequences that have confirmed growth trait effects in farmed animal species used in terrestrial agriculture and related sequences in crustacean species. The information in concert can provide a foundation for increasing the rate at which knowledge about key genes affecting growth traits in crustacean species is gained.

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Section: Candidate Genes Correlated With Growthmentioning

confidence: 96%

“…This apparent difference in effect may result from the cell types involved, given that HeLa cells are tumour cells while the shrimp cells were not (Tangprasittipap et al . ).…”

Section: Candidate Genes Correlated With Growthmentioning

confidence: 97%

Genes and growth performance in crustacean species: a review of relevant genomic studies in crustaceans and other taxa

Jung

Lyons

Hurwood

et al. 2013

Reviews in Aquaculture

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“…Pada krustase fungsi peptida mirip insulin ini belum jelas, tetapi dalam penelitian Gutie´rrez et al (2007) Pertumbuhan krustase berhubungan dengan penggantian kulit (moulting) (Keller, 1992). Moulting dikontrol oleh hormon ecdysteroid dari Y-organ dalam cepalotorak dan dihambat oleh hormon penghambat (molt inhibiting hormone/MIH) dari kelenjar Xorgan (Baldaia et al, 1984;Tangprasittipap et al, 2010). Selanjutnya Tangprasittipap et al (2010) …”

Section: Pendahuluanunclassified

“…Moulting dikontrol oleh hormon ecdysteroid dari Y-organ dalam cepalotorak dan dihambat oleh hormon penghambat (molt inhibiting hormone/MIH) dari kelenjar Xorgan (Baldaia et al, 1984;Tangprasittipap et al, 2010). Selanjutnya Tangprasittipap et al (2010) …”

Section: Pendahuluanunclassified

“…Hal yang sama juga terjadi pada kontrol tanpa perendaman (K), terjadi penurunan tingkat ekspresi dari 1,038 menjadi 0,003 (Gambar 2B). Tangprasittipap et al (2010) menemukan cyclophilin A (CypA) mempunyai korelasi yang tinggi terhadap bobot badan udang P. monodon. Untuk itu, dilakukan identifikasi dan pengukuran ekspresi gen CypA dan ternyata dengan penambahan rElGH tidak menunjukkan adanya aktivitas CypA, bahkan ekspresi gen menurun dibandingkan pada awal sebelum perlakuan.…”

Section: Sintasan Dan Biomassaunclassified

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RESPONS PERTUMBUHAN DAN EKSPRESI GEN UDANG VANAME, Litopenaeus vannamei SETELAH DIRENDAM DALAM LARUTAN HORMON PERTUMBUHAN REKOMBINAN IKAN KERAPU KERTANG

Subaidah¹,

Carman

Sumantadinata

et al. 2012

Jurnal Riset Akuakultur

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ABSTRAKPertumbuhan ikan dapat ditingkatkan menggunakan hormon pertumbuhan rekombinan. Penelitian ini bertujuan mengkaji respons pertumbuhan dan ekspresi gen udang vaname, Litopenaeus vannamei setelah direndam dengan hormon pertumbuhan rekombinan ikan kerapu kertang, Epinephelus lanceolatus (rElGH). Pada percobaan pertama, post larva stadia 2 (PL-2) sebanyak 1.500 ekor direndam selama 1 jam dalam 1 liter air laut yang mengandung rElGH lima dosis berbeda, yaitu 150; 15; 1,5; 0,15; dan 0,015 mg/L dan bovine serum albumin 0,01%. Setiap perlakuan diulang 3 kali. Perendaman dilakukan dalam kantong plastik ditambah oksigen (volume air : oksigen = 1:5). Udang dipelihara dalam akuarium volume 60 liter dengan kepadatan 25 ekor/liter sampai PL-14. Hasil penelitian menunjukkan bahwa dosis 15 mg/L memberikan peningkatan bobot badan, panjang badan, dan sintasan tertinggi (P<0,05) masingmasing sebesar 37,77%; 12,75%; dan 9,45% dibandingkan dengan kontrol. Ekspresi mRNA single insulin binding domain (SIBD) pada PL-14 yang dianalisis dengan realtime PCR menunjukkan kenaikan sebesar 3,3 kali pada udang yang direndam rElGH dibandingkan dengan kontrol, dan dapat dinyatakan bahwa SIBD berperan penting dalam induksi pertumbuhan. Tingkat ekspresi moult inhibiting hormone meningkat sekitar 13%, sedangkan ekspresi cyclopilin A pada udang yang direndam rElGH sama dengan kontrol. Pada percobaan kedua, perendaman PL-2 dalam larutan rElGH dosis 15 mg/L dengan lama waktu 3 jam meningkatkan bobot badan sebesar 62,18% lebih tinggi daripada perendaman 1 jam. Dengan demikian, perendaman udang dalam larutan rElGH meningkatkan pertumbuhan dan ekspresi gen SIBD, dan metode ini dapat berguna dalam peningkatan produksi budidaya.

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A Candidate Gene Association Study for Growth Performance in an Improved Giant Freshwater Prawn (Macrobrachium rosenbergii) Culture Line

Jung

Lyons

et al. 2013

Mar Biotechnol

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A candidate gene approach using type I single nucleotide polymorphism (SNP) markers can provide an effective method for detecting genes and gene regions that underlie phenotypic variation in adaptively significant traits. In the absence of available genomic data resources, transcriptomes were recently generated in Macrobrachium rosenbergii to identify candidate genes and markers potentially associated with growth. The characterisation of 47 candidate loci by ABI re-sequencing of four cultured and eight wild samples revealed 342 putative SNPs. Among these, 28 SNPs were selected in 23 growth-related candidate genes to genotype in 200 animals selected for improved growth performance in an experimental GFP culture line in Vietnam. The associations between SNP markers and individual growth performance were then examined. For additive and dominant effects, a total of three exonic SNPs in glycogen phosphorylase (additive), heat shock protein 90 (additive and dominant) and peroxidasin (additive), and a total of six intronic SNPs in ankyrin repeats-like protein (additive and dominant), rolling pebbles (dominant), transforming growth factor-β induced precursor (dominant), and UTP-glucose-1-phosphate uridylyltransferase 2 (dominant) genes showed significant associations with the estimated breeding values in the experimental animals (P =0.001-0.031). Individually, they explained 2.6-4.8 % of the genetic variance (R²=0.026-0.048). This is the first large set of SNP markers reported for M. rosenbergii and will be useful for confirmation of associations in other samples or culture lines as well as having applications in marker-assisted selection in future breeding programs.

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Characterization of candidate genes involved in growth of black tiger shrimp Penaeus monodon

Cited by 18 publications

References 44 publications

Genes and growth performance in crustacean species: a review of relevant genomic studies in crustaceans and other taxa

Genes and growth performance in crustacean species: a review of relevant genomic studies in crustaceans and other taxa

RESPONS PERTUMBUHAN DAN EKSPRESI GEN UDANG VANAME, Litopenaeus vannamei SETELAH DIRENDAM DALAM LARUTAN HORMON PERTUMBUHAN REKOMBINAN IKAN KERAPU KERTANG

A Candidate Gene Association Study for Growth Performance in an Improved Giant Freshwater Prawn (Macrobrachium rosenbergii) Culture Line

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