2004
DOI: 10.1016/j.bulm.2004.02.005
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Characterizing fluorescence recovery curves for nuclear proteins undergoing binding events

Abstract: Fluorescence recovery after photobleaching (FRAP) is an experimental technique used to measure the mobility of proteins within the cell nucleus. After proteins of interest are fluorescently tagged for their visualization and monitoring, a small region of the nucleus is photobleached. The experimental FRAP data are obtained by recording the recovery of the fluorescence in this region over time. In this paper, we characterize the fluorescence recovery curves for diffusing nuclear proteins undergoing binding even… Show more

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Cited by 55 publications
(92 citation statements)
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“…Mathematical models have been successful in the quantitative analysis of FRAP curves involving protein binding reactions (Carrero et al, 2004a;Carrero et al, 2004b;McDonald et al, 2006). These models share one important assumption: the fluorescent proteins have spatially homogeneous distributions.…”
Section: Discussionmentioning
confidence: 99%
See 1 more Smart Citation
“…Mathematical models have been successful in the quantitative analysis of FRAP curves involving protein binding reactions (Carrero et al, 2004a;Carrero et al, 2004b;McDonald et al, 2006). These models share one important assumption: the fluorescent proteins have spatially homogeneous distributions.…”
Section: Discussionmentioning
confidence: 99%
“…This technique has been used widely to determine the diffusion constant of biomolecules in membranes or various intracellular compartments (Chen et al, 2006;Carrero et al, 2003). Recent FRAP experiments have investigated direct protein activities, such as interaction with binding partners, with the fluorescence recovery curve analyzed to differentiate fast and slow components that correspond to diffusion and binding events, or different binding states (Tardy et al, 1995;Kimura et al, 2002;Dundr et al, 2002;Carrero et al, 2003;Carrero et al, 2004a;Carrero et al, 2004b;Sprague et al, 2004;McDonald et al, 2006). One recent study combined the FRAP technique with model convolution methods and measured a gradient in microtubule dynamics in yeast spindles at ~65-nm spatial intervals (Pearson et al, 2006).…”
Section: Introductionmentioning
confidence: 99%
“…The existing FRAP fitting models can be used for the analysis of protein diffusion (Ellenberg et al 1997;Soumpasis 1983) and binding reactions for one and several binding states, including cases where diffusion is a limiting factor for binding processes (Carrero et al 2004;Mueller et al 2008;Sprague et al 2004). This methodology provides important quantitative information on molecular dynamics in vivo, such as diffusion constants, rate constants of protein (un)binding, (im)mobile fraction(s) of proteins, spatial localisation of the fluorescent protein analogues.…”
Section: Introductionmentioning
confidence: 99%
“…Only a few studies at present used FRAP, associated with mathematical modelling, to gain quantitative information about actin polymerisation in living cells. Some of these studies have used binding approximation (Carrero et al 2004;McDonald et al 2006) to measure actin turnover in the nucleus or in cytoplasm (Campbell and Knight 2007). The model of Tardy et al (1995) was established specifically for FRAP experiments with actin filaments and was applied for the fitting of corresponding datasets.…”
Section: Introductionmentioning
confidence: 99%
“…Classically, FRAP measurements were performed using a focused, static laser beam to bleach molecules. In recent years, commercial laser scanning confocal microscopes (LSCMs) have become widely utilized to study of intracellular protein dynamics [2,3,4]. As such, confocal FRAP can now be used to study binding-diffusion kinetics of proteins within their native environments, an important goal in light of the universality of reaction and diffusion processes in cells.…”
mentioning
confidence: 99%