Using recombinant bead-conjugated emerin we affinity-purified seven proteins from HeLa cell nuclear lysates that bind emerin either directly or indirectly. These proteins were identified by mass spectrometry as nuclear αII-spectrin, non-muscle myosin heavy chain alpha, Lmo7 (a predicted transcription regulator; reported separately), nuclear myosin I, β-actin (reported separately), calponin 3 and SIKE. We now report emerin binds nuclear myosin I (NMI, a molecular motor) directly in vitro. Furthermore, bead-conjugated emerin bound nuclear αII-spectrin and NMI equally well with or without ATP (which stimulates motor activity), whereas ATP decreased actin binding by 65%. Thus αII-spectrin and NMI interact stably with emerin. To investigate the physiological relevance of these interactions, we used antibodies against emerin to affinity-purify emerin-associated protein complexes from HeLa cells, then further purified by ion exchange chromatography to resolve by net charge, and size exclusion chromatography yielding six distinct emerin-containing fractions (0.5 to 1.6 MDa). Western blotting suggested each complex had distinct components involved in nuclear architecture (e.g., NMI, αII-spectrin, lamins) or gene or chromatin regulation (BAF, transcription regulators, HDACs). Additional constituents were identified by mass spectrometry. One putative gene-regulatory complex (complex 32) included core components of the Nuclear Co-Repressor (NCoR) Complex, which mediates gene regulation by thyroid hormone and other nuclear receptors. 155/170; BAT, HLA-B-associated transcript 1; BCCIP, BRCA2 and CDKN1A-interacting protein; BSA, Bovine serum albumin; Btf, Bcl-2-associated transcription factor; Dnmt1, DNA methyltransferase 1; DRIP, Vitamin D receptor-interacting protein; EDMD, EmeryDreifuss muscular dystrophy; ERBA1, Thyroid hormone receptor alpha; FUBP1, far upstream element binding protein 1; G3BP1, RasGTPase-activating protein-binding protein; GCL, Germ-cell less; H1, histone 1; H3, histone 3; H3K9me, H3-lysine-9-methyl; HDAC, Histone deacetylase; Gps2, G protein pathway suppressor 2; HDGF, hepatoma-derived growth factor; hnRNP, heterogeneous nuclear ribonucleoprotein; HP1, heterochromatin protein 1; IQGAP1, IQ motif-containing GTPase-activating protein 1; KAP1, KRAB-associated protein 1; KCIP-1, Protein kinase C inhibitor protein 1; LBR, lamin B receptor; Lmo7, Lim domain only 7; Lsm, Sm-like; MCM, minichromosome maintenance; Mst-3, mammalian sterile 20 kinase-like 3; NCoR, Nuclear Co-repressor; NFAR, nuclear factor associated with double-stranded RNA; NF-Y, nuclear transcription factor Y; NMI, nuclear myosin I; NMMHCA, non-muscle myosin heavy chain A; NuMA, nuclear mitotic apparatus protein; NURD, nucleosome remodeling and histone deacetylation; PDCD4, programmed cell death 4; Rb, Retinoblastoma protein; RBD, repressor-binding domain; Rpd3, reduced potassium dependency 3; SAP18, Sin3-associated polypeptide 18 kD; SAP130, spliceosome-associated polypeptide 130 kD; SETDB1, SET-domain protein bifurcated 1; SF2, Splici...