Histone deacetylase (HDAC) inhibitors affect cell homeostasis, gene expression, and cell cycle progression and promote cell terminal differentiation or apoptosis. However, the effect of HDAC inhibition on SH-SY5Y cells, neuroblastoma cells capable of differentiating into neurons under specific conditions, such as in presence of retinoic acid (RA), is unknown. In this study, we hypothesized that HDAC inhibitors induced the neuronal differentiation of SH-SY5Y cells. To test this hypothesis, we used phase contrast microscopy, immunocytochemistry (ICC), reverse transcriptase PCR (RT-PCR), and western blot analysis. MS-275 and valproic acid (VPA), two HDAC inhibitors, were selected to evaluate neuronal differentiation. It was confirmed that cells treated with MS-275 or VPA differentiated into mature neurons, distinguished by bipolar or multipolar morphologies with elongated branches. In addition, the mRNA expression of neuronal markers (MAP2 and NEFH), the astrocytic marker (GFAP), and the oligodendrocyte marker (CNP) was significantly increased with MS-275 or VPA treatment compared to RA treatment. Interestingly, the mRNA expression of NEFM, another neuronal marker, was only increased in VPA treatment compared to RA treatment. In addition, the protein expression of Tuj1 and NeuN, other neuronal markers, were highly expressed with HDAC inhibitors compared to RA treatment. Furthermore, we confirmed that non-canonical Wnt signaling was upregulated with HDAC inhibitors via MAPK signaling and the Wnt/JNK pathway. Therefore, both MS-275 and VPA promoted the differentiation of SH-SY5Y cells into mature neurons via the Wnt signaling pathway.