c Microbiological, genomic and transcriptomic analyses were used to examine three species from the bacterial genus Caldicellulosiruptor with respect to their capacity to convert the carbohydrate content of lignocellulosic biomass at 70°C to simple sugars, acetate, lactate, CO 2 , and H 2 . Caldicellulosiruptor bescii, C. kronotskyensis, and C. saccharolyticus solubilized 38%, 36%, and 29% (by weight) of unpretreated switchgrass (Panicum virgatum) (5 g/liter), respectively, which was about half of the amount of crystalline cellulose (Avicel; 5 g/liter) that was solubilized under the same conditions. The lower yields with C. saccharolyticus, not appreciably greater than the thermal control for switchgrass, were unexpected, given that its genome encodes the same glycoside hydrolase 9 (GH9)-GH48 multidomain cellulase (CelA) found in the other two species. However, the genome of C. saccharolyticus lacks two other cellulases with GH48 domains, which could be responsible for its lower levels of solubilization. Transcriptomes for growth of each species comparing cellulose to switchgrass showed that many carbohydrate ABC transporters and multidomain extracellular glycoside hydrolases were differentially regulated, reflecting the heterogeneity of lignocellulose. However, significant differences in transcription levels for conserved genes among the three species were noted, indicating unexpectedly diverse regulatory strategies for deconstruction for these closely related bacteria. Genes encoding the Che-type chemotaxis system and flagellum biosynthesis were upregulated in C. kronotskyensis and C. bescii during growth on cellulose, implicating motility in substrate utilization. The results here show that capacity for plant biomass deconstruction varies across Caldicellulosiruptor species and depends in a complex way on GH genome inventory, substrate composition, and gene regulation.
T he genusCaldicellulosiruptor is comprised of Gram-positive, anaerobic bacteria that ferment a variety of simple and complex carbohydrates to primarily H 2 , CO 2 , acetate, and lactate at temperatures at or above 70°C (1). To date, Caldicellulosiruptor species have been isolated globally from terrestrial hot springs and thermal features in locations including the United States (C. owensensis [2,3] and C. obsidiansis [4,5]), Russia (C. bescii [6,7]), C. kronotskyensis [2,8], and C. hydrothermalis [2,8]), New Zealand (C. saccharolyticus [9-11]), and Iceland (C. kristjanssonii [2,12] and C. lactoaceticus [2,13]). Characteristic of Caldicellulosiruptor species are multidomain extracellular and S-layer-associated glycoside hydrolases (GHs) that mediate the microbial conversion of complex carbohydrates (14-16). Sequenced genomes for Caldicellulosiruptor species (2, 4, 6, 10) indicate that some, but not all, encode GH48-containing enzymes (17), and these appear to be essential for crystalline cellulose degradation (18). The cellulolytic Caldicellulosiruptor species also utilize novel binding proteins (ta pirins) to adhere to plant biomass (19). Sever...