The essential TFB1 and SSL1 genes of the yeast Saccharomyces cerevisiae encode two subunits of the RNA polymerase II transcription factor TFIIH (factor b). Here we show that extracts of temperature-sensitive mutants carrying mutations in both genes (tfb1-101 and ssl1-1) are defective in nucleotide excision repair (NER) and RNA polymerase II transcription but are proficient for base excision repair. RNA polymerase II-dependent transcription at the CYC1 promoter was normal at permissive temperatures but defective in extracts preincubated at a restrictive temperature. In contrast, defective NER was observed at temperatures that are permissive for growth. Additionally, both mutants manifested increased sensitivity to UV radiation at permissive temperatures. The extent of this sensitivity was not increased in a tfb1-101 strain and was only slightly increased in a ssl1-1 strain at temperatures that are semipermissive for growth. Purified factor TFIIH complemented defective NER in both tfb1-101 and ssl1-1 mutant extracts. These results define TFB1 and SSL1 as bona fide NER genes and indicate that, as is the case with the yeast Rad3 and Ssl2 (Rad25) proteins, Tfb1 and Ssl1 are required for both RNA polymerase II basal transcription and NER. Our results also suggest that the repair and transcription functions of Tfb1 and Ssl1 are separable.Transcription from mammalian or Saccharomyces cerevisiae promoters by RNA polymerase II requires multiple initiation factors, including TFIIB (factor e), TFIID (factor d), TFIIE (factor a), TFIIF (factor g), and TFIIH (factor b) (2, 6). The transcriptionally active form of factor b in a yeast reconstituted system in vitro is designated holo-TFIIH, comprising core TFIIH, Ssl2 protein, and the three-subunit kinase TFIIK (22). Core TFIIH with associated Ssl2 (core TFIIH-Ssl2) consists of six subunits of ϳ105, 85, 70, 50, 55, and 38 kDa (6,22). The first four subunits have been identified as the products of the SSL2 (RAD25), RAD3, TFB1, and SSL1 genes, respectively (6,10,22). Homologous genes designated XPB, XPD, p62, and p44, respectively, encode subunits of TFIIH(BTF2) in human cells (4,7,13,19,20). Mutations in the XPB and XPD genes are associated with several human hereditary diseases, including xeroderma pigmentosum, xeroderma pigmentosum with Cockayne's syndrome, and trichothiodystrophy (1, 27).Core TFIIH-Ssl2 is required for both transcription by RNA polymerase II and nucleotide excision repair (NER) in S. cerevisiae and humans (4,23,25,28). Consistent with their requirement for transcription, SSL2, RAD3, TFB1, and SSL1 are essential yeast genes (10-12, 17, 18, 34). The same presumably holds true for the homologous human genes, though the essentiality of gene function is difficult to demonstrate directly for mammalian cells.Recent studies have shown that cell extracts of viable yeast rad3 and ssl2 mutants are defective in NER (28). These defects can be corrected by complementation of the extracts with purified core TFIIH or core TFIIH-Ssl2 complexes, respectively, but not by complem...