The desulfurization of dibenzothiophene in Rhodococcus erythropolis is catalyzed by two monooxygenases, DszA and DszC, and a desulfinase, DszB. In the last step of this pathway, DszB hydrolyzes 2-hydroxybiphenyl-2-sulfinic acid into 2-hydroxybiphenyl and sulfite. We report on the crystal structures of DszB and an inactive mutant of DszB in complex with substrates at resolutions of 1.8 Å or better. The overall fold of DszB is similar to those of periplasmic substrate-binding proteins. Sulfur oxides released into the atmosphere by combustion of fossil fuel cause serious air pollution, which leads to acid rain and destroys forests and soils. Sulfur oxides also raise public health concerns associated with cardiopulmonary diseases (1).To alleviate these problems, efforts are being made to limit the sulfur content in diesel and gasoline fuel. Inorganic or nonaromatic organic sulfur compounds can easily be removed from fossil fuels by the conventional metal-catalyzed hydrodesulfurization method (2), but it is difficult to remove polycyclic aromatic sulfur compounds such as benzothiophene and dibenzothiophene (DBT) 2 (3). In particular, DBT is considered as a model compound of polycyclic organic sulfur compounds in fossil fuels, and degradation of DBT by microbial activities has been studied with a keen interest in biodesulfurization (4, 5).Sulfur-specific DBT degradation pathway, which is capable of transforming DBT to sulfite and 2-hydroxybiphenyl (HBP), was identified in the soil bacterium Rhodococcus erythropolis (6, 7) and found to be catalyzed by the following three enzymes: DszA, DszB, and DszC (8, 9). DszA and DszC are flavin-dependent monooxygenases and responsible for oxidation of DBT to 2Ј-hydroxybiphenyl-2-sulfinic acid (HBPS). A 39-kDa protein DszB (EC 3.13.1.3) participates in the last desulfurization step and hydrolyzes the sulfinate group of HBPS (Scheme 1).The reaction catalyzed by DszB is the slowest in the pathway and thus was proposed as the rate-limiting step in desulfurization (10). DszB is inhibited by the reaction product of HBP but not by biphenyl, which indicates that the hydroxyl group is required for the inhibition. However, DszB can accept biphenyl-2-sulfinic acid (BPS) as a substrate, and the hydroxyl group of HBPS does not seem to be essential for the activity (11). DszB is also strongly inhibited by cysteine-modifying reagents, and mutation of the unique cysteine residue, Cys 27 , into serine abolished the activity (11).Besides biodesulfurization, knowledge of sulfur metabolism by soil bacteria is particularly interesting because of their competition for sulfur nutrient with plants. Although biochemical studies have shown that DszB is a unique desulfinase, its detailed molecular reaction mechanism remains largely unknown. In an attempt to expand our understanding of bacterial desulfurization in molecular detail, we determined crystal structures of DszB in complex with substrates HBPS and BPS.
EXPERIMENTAL PROCEDURESMaterials-BPS was synthesized as reported previously (12). Sodium salt of ...