The water-to-air scanning method coupled with gCAP analysis identifies the alignment of the IC OR to the water surface within the scanning resolution for all ICs studied. The gCAP method can precisely and reproducibly align the physical center of a given cylindrical IC with the water surface, be applied prospectively or retrospectively, and provides the prospect for automated water surface identification for scanning systems. The gCAP method eliminates the visual subjectivity inherent to current IC-to-water surface alignment techniques, has been validated with a wide variety of commercially available ICs, and should be independent of the scanning system used for data acquisition.