The current knowledge of microbial biocenoses (communities) in pristine aquifers is presented in a review, which also discusses their relevance for questions of groundwater protection. Aquifers are heterogeneous on all scales and structured in a variety of habitats. The void spaces in many aquifers are small. The biocenoses are thus predominantly composed of microorganisms and, often, microinvertebrates. Larger voids and macroorganisms occur in karst cavities. Due to the absence of light, the biocenoses depend on chemical energy resources, which are, however, scarce in non-contaminated groundwater. The microorganisms thus show small cell sizes, low population densities and reduced activity; they developed specific strategies to survive oligotrophic conditions. The review also discusses the impact of contamination on the biocenoses, and the potential use of the biocenoses or specific organisms as indicators for groundwater quality, and the limits of this approach. Bacteria are either planktonic or attached to aquifer material, which requires both fluid and solid phase sampling. Most groundwater bacteria are viable but non-culturable. Consequently, cultivation techniques give an incomplete picture of the biocenoses, while methods from molecular microbiology provide genetic fingerprints of the entire community. Different analytical methods are available to count microorganisms, identify species, characterise microbial diversity, and measure activity.RĂ©sumĂ© Cette revue expose l'Ă©tat actuel des connaissances concernant les biocĂ©noses microbiennes prĂ©sentes dans les aquifères oligotrophes. L'impact d'une contamination sur les biocĂ©noses est discutĂ©, ainsi que le potentiel que Les bactĂ©ries sont planctoniques ou attachĂ©es aux matĂ©riaux de l'aquifère, ce qui demande unĂ©chantillonnagè a la fois de l'eau et du substrat. De nombreuses mĂ©thodes sont aujourd'hui disponibles pour le comptage, l'identification et la caractĂ©risation de la diversitĂ©, ainsi que la mesure des activitĂ©s des organismes des aquifères. Comme la grande majoritĂ© des bactĂ©ries est viable mais non cultivable, les techniques de cultures actuelles ne donnent qu'une image incomplète des communautĂ©s, alors que les mĂ©thodes molĂ©culaires dĂ©veloppĂ©es rĂ©cemment offrent la possibilitĂ© d'obtenir un profil de la communautĂ© plus complet.Resumen Se presentauna reseña crĂtica del conocimiento actual de biocenosis microbiana (comunidades) en acuĂferos prĂstinos la cual tambiĂ©n discute su relevancia en tĂ©rminos de protecciĂłn de aguas subterráneas. Los acuĂferos son heterogĂ©neos en todas las escalas y estructurados en una variedad de habitats. Los espacios vacĂos en muchos acuĂferos son pequeños. La biocenosis está por lo tanto compuesta predominantemente por microorganismos y, frecuentemente, microinvertebrados. Espacios más grandes y macroorganismos ocurren en cavidades kársticas. Debido a la ausencia de luz la biocenosis depende de recursos energĂ©ticos quĂmicos los cuales, sin embargo, son escasos en agua subterránea no contaminada. Los microorganismos muestran...