DNA Barcoding of Commercially Important Trevallies, Carangoides spp. (Carangiformes: Carangidae): A Baseline Report of Species from Malaysia

Nur, Nuralif Fakhrullah Mohd; Abdullah, Shuhairimi; Seah, Ying Giat; Nor, Siti Azizah Mohd; Tan, Min Pau; Habib, Ahasan; Piah, Rumeaida Mat; Jaafar, Tun Nurul Aimi Mat

doi:10.1007/s41208-022-00405-9

Cited by 4 publications

(2 citation statements)

References 49 publications

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“…Accurate identi cation of organisms based on partial sequence of COI gene. However, the success of species identi cation using DNA barcoding is dependent on the accuracy of species identi cation in DNA barcode libraries, speci cally GenBank and the BOLD System (Nur et al 2022) and ABGD analysis (Seth and Barik 2021). DNA barcoding clearly distinguish Echinoderm species with barcodes on Australia, Canada, India, Thailand, Germany, and Indonesia (Ward et al 2005, Hubert et al 2008).…”

Section: Introductionmentioning

confidence: 99%

New Record of Echinoderms from Gili Ketapang Island by Combining DNA Barcoding and Morphology: A Baseline Report

Nugroho

Ardiansyah

Kurniawan

et al. 2022

Preprint

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Echinoderms are marine water invertebrates that are showing diverse morphologies and grouped in five classes, however the reports on this species from Gili Ketapang Island, East Java is currently limited. DNA barcodes (DNA fragments of the 5' end of the cytochrome c oxidase subunit I gene, COI) have been used to support the morphological examination in identifying evolutionary lineages. This study aims to identify the morphology and supplement of COI sequence and phylogenetic of Echinoderms from Gili Ketapang Island. A total of sixteen samples of Echinoderms were collected from Gili Ketapang, Probolinggo, Indonesia, then identified based on morphological characters, and supports identification was confirmed using molecular data. Subsequently, molecular characterization and identification was conducted based on 503 bp of COI gene similarity, sequence variation, genetic distance, phylogenetic topology, and BOLD System. According to the results, sixteen sample were identified as Diadema setosum; Macrophiothrix longipeda; Archaster typicus; Echinometra mathaei, Holothuria atra; Linckia laevigata, Bohadschia argus, and Ophiactis savignyi. Each species was associated with a specific DNA barcode cluster and the relationship among these species was clearly revealed. Each species based on morphological identification and COI sequence clusters were congruent. The median joining network and Automatic Barcode Gap Discovery (ABGD) analysis showed this Echinoderms population from Probolinggo had relatives of 14 haplotypes and divided into eight haplogroups. Furthermore, the population belonged to the same haplogroup but had different haplotypes. This newly records established sequence reference library for the Gili Ketapang Island.

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Section: Introductionmentioning

confidence: 99%

New Record of Echinoderms from Gili Ketapang Island by Combining DNA Barcoding and Morphology: A Baseline Report

Nugroho

Ardiansyah

Kurniawan

et al. 2022

Preprint

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show abstract

“…Mitochondrial DNA markers, particularly COI, have been proven to be a powerful tool for revealing phylogenetic patterns, species identification and genetic diversity of aquatic species [ 12 , 13 ]. Furthermore, the COI gene is commonly used for DNA barcoding, and is also useful for distinguishing cryptic species [ 11 , 14 ]. This study was also aimed to compare the COI sequences with the GenBank sequences of L. xanthopinnis from other sites (Bangladesh, Indonesia, Japan, western Peninsular Malaysia, Singapore, Sri Lanka and Taiwan), which would provide an insight into its population structure.…”

Section: Introductionmentioning

confidence: 99%

Mitochondrial cytochrome c oxidase subunit I gene analysis of the yellowfin snapper, Lutjanus xanthopinnis in the Indo-Pacific region and a note on Lutjanus lutjanus population structure

Arai,

Taha,

Alidon

et al. 2023

Heliyon

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Length Frequency Distribution, Length-Weight Relationships and Growth Parameters of Coastal Trevally Turrum coeruleopinnatum (Rüppell, 1830) Caught from Terengganu Waters, Malaysia

et al. 2023

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DNA Barcoding of Commercially Important Trevallies, Carangoides spp. (Carangiformes: Carangidae): A Baseline Report of Species from Malaysia

Cited by 4 publications

References 49 publications

New Record of Echinoderms from Gili Ketapang Island by Combining DNA Barcoding and Morphology: A Baseline Report

New Record of Echinoderms from Gili Ketapang Island by Combining DNA Barcoding and Morphology: A Baseline Report

Mitochondrial cytochrome c oxidase subunit I gene analysis of the yellowfin snapper, Lutjanus xanthopinnis in the Indo-Pacific region and a note on Lutjanus lutjanus population structure

Length Frequency Distribution, Length-Weight Relationships and Growth Parameters of Coastal Trevally Turrum coeruleopinnatum (Rüppell, 1830) Caught from Terengganu Waters, Malaysia

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