Soil health is the basis of ecological and food security for humanity. Among the informative indicators of soil health are microbiological indicators based on the intensity of the carbon dioxide release from the soil. The reaction of the microbial community of Haplic Chernozem Loamic, Haplic Arenosols Eutric, and Haplic Cambisols Eutric to contamination with oxides and nitrates of Ag, Bi, Tl, and Te at doses of 0.5, 1, 3, 10, and 30 derived specific permissible concentrations (SPC) was analyzed in the conditions of a vegetation experiment (the exposure period was 10 days). One derived concentration is assumed to be equal to three background concentrations of the element in the soil. The carbon content of microbial biomass in Haplic Chernozem varied between the experimental options from 6 to 218 mg/kg of soil; in Haplic Arenosols, from 3 to 349 mg/kg of soil; and in Haplic Cambisols, from 7 to 294 mg/kg of soil. Microbial biomass was a more sensitive indicator of contamination by the studied pollutants than basal soil respiration. A decrease in specific microbial respiration was found when Haplic Cambisols were contaminated with Ag, Bi, Te, and Tl oxides. Te and Tl nitrates had a significant toxic effect on each type of soil. At the maximum dose of Tl and Te nitrate, a decrease in basal soil respiration of 56–96% relative to the control and an increase in the metabolic coefficient by 4–6 times was found. The toxicity series of heavy metals averaged for all types of soils in terms of microbiological activity was established: Bi > Ag > Te > Tl (oxides) and Te > Tl > Ag > Bi (nitrates). Nitrates of the elements were more toxic than oxides. Soil toxicity due to Ag, Bi, Tl, and Te contamination was dependent on soil particle size distribution, organic matter content, and soil structure. A series of soil sensitivity to changes in microbial biomass and basal soil respiration when contaminated with the studied pollutants: Haplic Arenosols > Haplic Chernozems > Haplic Cambisols. When diagnosing and assessing the health of soils contaminated with Ag, Bi, Tl, and Te, it is advisable to use indicators of soil microbiological activity.