In the border region between Brazil and French Guiana, American cutaneous leishmaniasis is a worrisome public health issue, and entomological studies are required there to better identify classical and putative emerging transmission patterns. The present study aimed to detect and characterize
Leishmania
DNA in the phlebotomine population of Oiapoque (Amapá State, Brazil). Phlebotomines were captured in anthropized and wild environments in the outskirts of Oiapoque municipality, using CDC light traps installed in vertical (ground/canopy level) and horizontal (peridomicile/extradomicile/forest-edge/forest) strata. Captured specimens were identified according to their morphology. Females were processed for
Leishmania
DNA detection and characterization using a multiplex polymerase chain reaction targeting kinetoplast DNA (kDNA) and the phlebotomine cacophony gene. The kDNA positive samples were characterized by cloning and sequencing the
Leishmania
234 bp-
hsp70
gene. Among the 3957 phlebotomine specimens captured, 26 pooled female samples were positive for
Leishmania
(
Viannia
) spp. DNA. Sequencing analysis allowed species-specific identification of
L
. (
V
.)
braziliensis
DNA in
Trichophoromyia ininii
,
Bichromomyia flaviscutellata
,
Nyssomyia umbratilis
, and
Evandromyia infraspinosa
, and
L
. (
V
.)
guyanensis
DNA in
Ny
.
umbratilis
. A pooled sample of
Ny
.
umbratilis
was positive for both
L
. (
V
.)
braziliensis
and
L
. (
V
.)
guyanensis
DNA. The present study provided additional information regarding ACL ecology in Oiapoque, highlighting the presence of
L
. (
V
.)
braziliensis
DNA in different phlebotomine species. The epidemiological implications of these findings and the determinant incrimination of
L
. (
V
.)
braziliensis
as proven vectors in that region must be clarified. In this regard, studies on
Leishmania
spp. infection and suggestive anthropophilic behavior of associated phlebotomines need to be prioritized in entomological surveillance.