Comparative studies of chemosensory systems in vertebrates and invertebrates have greatly enhanced our understanding of anatomical and physiological constraints of chemical detection. Immunohistochemical comparisons of chemosensory systems are difficult to make across species due to limited cross-reactivity of mammalian-based antibodies. Immunostaining chemosensory tissues with glutaraldehyde-based antibodies generated against small metabolites in combination with hierarchical cluster analyses provide a novel approach for identifying and classifying cell types regardless of species. We used this ''metabolite profiling'' technique to determine whether metabolite profiles can be used to identify cell classes within and across different species including mouse, zebrafish, lobster and squid. Within a species, metabolite profiles for distinct cell classes were generally consistent. We found several metabolite-based cell classifications that mirrored function or receptor protein-based classifications. Although profiles of all six metabolites differed across species, we found that specific metabolites were associated with certain cell types. For example, elevated levels of glutathione were characteristic of nonsensory cells from vertebrates, suggesting an antioxidative role in non-neuronal cells in sensory tissues. Collectively, we found significantly different metabolite profiles for distinct cell populations in chemosensory tissue within all of the species studied. Based on their roles in other systems or cells, we discuss the roles of L-arginine, L-aspartate, L-glutamate, glycine, glutathione, and taurine within chemosensory epithelia. Anat Rec, 291:410-432, 2008. 2008 Key words: olfactory; vomeronasal; mouse; zebrafish; lobster; squidAbbreviations used: AOI = area of interest; Arg = arginine; Asp = aspartate; ATG = aesthetasc tegumental glands; EC = ensheathing cell; Glu = glutamate; GSH = glutathione; Gly = glycine; IR = immunoreactivity; NOS = nitric oxide synthase; OE = olfactory epithelium; ORN = olfactory receptor neuron; RGB = red, green, blue; SC = sustentacular cell; Tau = taurine; VN = vomeronasal neuron; VNO = vomeronasal organ.The Supplementary Material referred to in this article can be found at