Macroalgae represent a potential biomass source for the production of bioethanol or biogas. Their use, however, is limited by several factors including, but not restricted to, their continuous supply for processing, and low biofuel yields. This review examines recent pre-treatment processes that have been used to improve the yields of either biogas or bioethanol from macroalgae. Factors that can influence hydrolysis efficiency and, consequently, biofuel yields, are highly affected by macroalgal composition, including content of salts, heavy metals, and polyphenols, structural make-up, as well as polysaccharide composition and relative content of carbohydrates. Other factors that can influence biofuel yield include the method of storage and preservation.