Invasive fungal diseases are a leading cause of mortality among immune-compromised populations. Treatment is notoriously difficult due to the limited number of antifungal drugs as well as the emergence of drug resistance. Tamoxifen (TAM), a selective estrogen receptor modulator frequently used for treatment of breast cancer, has been found to have antifungal activities, and may be a useful addition to treat fungal infectious diseases. However, its molecular mechanisms underlying the antifungal actions remain obscure. Here, we screened for mutations that conferred sensitivity to antifungal drug azoles by using fission yeast as a model, and isolated the cls1 (ccr1) mutant, an allele of the gene encoding NADPH-cytochrome P450 reductase Ccr1. We found that deletion of ccr1+ gene exhibited hypersensitivities to various drugs, including antifungal drugs azoles, terbinafine, micafungin, immunosuppressor FK506, anticancer drugs TAM and 5-fluorouracil (5-FU). Unexpectedly, overexpression of Ccr1 caused yeast cells resistance to TAM, but not the other drugs tested here. Additionally, deletion of Ccr1 displayed pleiotropic phenotypes, including defects in cell wall integrity and vacuole fusion, enhanced calcineurin activity as well as increased intracellular Ca2+ levels. Overexpression of the constitutively active calcineurin suppressed the drug sensitive phenotypes of the Δccr1 cells. Notably, TAM treatment on wild-type cells resulted in pleiotropic phenotypes, similar to that of Ccr1 lacking. Furthermore, TAM inhibited NADPH-cytochrome P450 reductase activities Ccr1 activity in a dose-dependent manner. Moreover, TAM treatment also inhibited NADPH-cytochrome P450 reductase activities of Candida albicans and resulted in defective cell wall integrity. Collectively, our findings suggest that Ccr1 is a novel target of TAM and is involved in the antifungal activity of TAM through regulating cell wall integrity in fission yeast.