This study examined the fate and effects of tylosin (TYL) on anaerobic digestion of swine wastewater at two concentrations of tylosin A (TYLA) using manure collected from swine fed with TYLA (TYL FED ) or direct addition of TYLA (TYL ADD ) to antibiotic-free swine manure, to examine whether there are differences between the two TYL addition methods on methane production and other fermentation parameters. TYLA and tylosin D (TYLD) concentrations, pH, Chemical oxygen demand (COD), Total nitrogen (TN), and diversity of methanogenic archaea population were parameters used for this study. The results showed that concentrations of TYLA and TYLD in the TYL FED treatment were higher (P < 0.05) than those in the TYL ADD treatment. Methane production in the TYL FEDH and TYL FEDL was reduced by 35.52% and 37.06%, respectively, compared with the control during the 7 days addition period; but for TYL ADDH and TYL ADDL , the decrease (P < 0.05) was only 12.98% and 7.84%, respectively. The diversity index of methanogenic archaea in the TYL FED treatment were lower than that in the control and the TYL ADD on Day 4, but no difference (P > 0.05) between the control and the TYL ADD treatment was observed. pH, COD, and TN were not affected by treatment. Our results showed clear differences in the rate of methane inhibition by the two antibiotic inclusion methods; been higher for the TYL FED treatment than the TYL ADD treatment. Since the former method resembles more under actual farm conditions, we suggested that studies on effects of antibiotic residues on anaerobic fermentation should adopt such an approach.