To explore the interactions between ubiquinones and oxygen in living organisms, the thermodynamics of a series of electron and hydrogen transfer reactions between semiquinone radicals, as well as their corresponding protonated forms, and oxygen, singlet or triplet, were studied using the hybrid Hartree±Fock± density functional theory method Becke's three parameter hybrid method with the Lee, Yang, and Parr correlation functional. Eects of the solvent and of the isoprenyl tail on the electron and hydrogen transfer reactions were also investigated. It is found that semiquinone radicals (semiquinone anion radicals or protonated semiquinone radicals) cannot react with triplet oxygen to form the superoxide anion radical O À5 2 . In contrast, neutral quinones can scavenge O À5 2 eciently. In the gas phase, only protonated semiquinone radicals can react spontaneously with singlet oxygen to produce peroxyl radical (HO 5 2 ). However, both semiquinone anion radicals and protonated semiquinone radicals can react with singlet oxygen to produce harmful oxygen radicals (O À5 2 and HO 5 2 , respectively) in aqueous and protein environments. The free-energy changes of the corresponding reactions obtained for dierent ubiquinone systems are very similar. It clearly shows that the isoprenyl tail does not in¯uence the electron and hydrogen transfer reactions between semiquinone radicals and oxygen signi®cantly. Results of electron anities, vertical ionization potentials, and proton anities also show that the isoprenyl tail has no substantial eect on the electronic properties of ubiquinones.