2016
DOI: 10.18632/oncotarget.14287
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Elucidation of the genetic and epigenetic landscape alterations in RNA binding proteins in glioblastoma

Abstract: RNA binding proteins (RBPs) have been implicated in cancer development. An integrated bioinformatics analysis of RBPs (n = 1756) in various datasets (n = 11) revealed several genetic and epigenetically altered events among RBPs in glioblastoma (GBM). We identified 13 mutated and 472 differentially regulated RBPs in GBM samples. Mutations in AHNAK predicted poor prognosis. Copy number variation (CNV), DNA methylation and miRNA targeting contributed to RBP differential regulation. Two sets of differentially regu… Show more

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Cited by 29 publications
(31 citation statements)
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References 81 publications
(80 reference statements)
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“…More information on known cancer susceptibility genes and regions have been summarized by Parsons et al (2008), Li et al (2016), and Bhargava et al (2017) for GB (Bahrami et al, 2018; Tan et al, 2018) for CC (Collins, 2011; Michailidou et al, 2015) for BC, and (Martinez-Gonzalez et al, 2018; Benafif and Eeles, 2016) for PCa.…”
Section: Micrornasmentioning
confidence: 99%
“…More information on known cancer susceptibility genes and regions have been summarized by Parsons et al (2008), Li et al (2016), and Bhargava et al (2017) for GB (Bahrami et al, 2018; Tan et al, 2018) for CC (Collins, 2011; Michailidou et al, 2015) for BC, and (Martinez-Gonzalez et al, 2018; Benafif and Eeles, 2016) for PCa.…”
Section: Micrornasmentioning
confidence: 99%
“…Concerning the present findings, the expression of AHNAK is down-regulated in human breast cancer 12 , melanoma 21 , Burkitt lymphoma, colon carcinoma, and neuroblastoma 9 ; but up-regulated in mesothelioma 22 , laryngeal carcinoma 23 and invasive ductal carcinoma 24 . Meanwhile, researches showed that AHNAK mutation was considered as a prognostic factor related to the poor survival of patients with melanoma 21 , laryngeal carcinoma 23 , triple-negative breast cancer 25 and glioblastoma 26 .…”
Section: Introductionmentioning
confidence: 99%
“…Accordingly, it may be expected that new types of GBMs will be identified in the future based on unique molecular changes as proposed recently [4,5]. Finally, since the detailed description of genetic and epigenetic changes in GBM was not the primary focus of the present work, interested readers will find more in-depth information in several other published reports [8][9][10].…”
Section: Molecular Classification Of Gbmmentioning
confidence: 89%