Ion nanocalorimetry is used to measure the effects of electron kinetic energy in electron capture dissociation (ECD). With ion nanocalorimetry, the internal energy deposited into a hydrated cluster upon activation can be determined from the number of water molecules that evaporate. Varying the heated cathode potential from -1.3 to -2.0 V during ECD has no effect on the average number of water molecules lost from the reduced clusters of either [Ca(H Z O)lSf+ or [Ca(HzO)d z +, even when these data are extrapolated to a cathode potential of zero volts. These results indicate that the initial electron kinetic energy does not go into internal energy in these ions upon ECD. No effects of ion heating from inelastic ion-electron collisions are observed for electron irradiation times up to 200 ms, although some heating occurs for [Ca(HzO)d z + at longer irradiation times. In contrast, this effect is negligible for [Ca(H Z O)3Zf+, a cluster size typically used in nanocalorimetry experiments, indicating that energy transfer from inelastic ion-electron collisions is negligible compared with effects of radiative absorption and emission for these larger clusters. These results have significance toward establishing the accuracy with which electrochemical redox potentials, measured on an absolute basis in the gas phase using ion nanocalorimetry, can be related to relative potentials measured in solution. [3][4][5][6][7], and even tertiary structure can be obtained [2,8,9]. Since the introduction of this electron capture dissociation (ECD) method by Zubarev and colleagues [1], who combined thermally generated electrons with trapped ions in a Fourier-transform ion cyclotron resonance (FT/ICR) mass spectrometer, others have demonstrated that similar fragmentation pathways can be obtained when the electron is captured from an atom [10,11] or from molecular anions (12,13]. These methods provide a new route to obtain structural information from intact proteins and large peptides, making applications such as "top-down" proteomics [7] feasible.Ion-electron recombination or electron capture (EC) is exothermic by a value corresponding to the recombination energy (RE) [14,15] into internal modes of the precursor ion and into translational, rotational, and vibrational modes of the dissociation products. The extent of internal energy deposition upon ion activation can be measured using "chemical thermometers," which are ions that have fragmentation pathways with known activation energies and entropies. For example, Cooks and colleagues used Fe(CO)s+. to compare the energy deposition of collision-induced dissociation and surface-induced dissociation [16]. The appearance energies for fragments of Fe(CO)s +. are known and their formation occurs with similar entropies, so that the internal energy deposition is directly reflected by the fragment ion abundances. A measure of the internal energy deposition into molecular ions of n-butylbenzene molecules can be obtained from the relative abundance of fragment ions at m/z 91 and 92 [17][18][19]. Th...