This study compared the effect of experimental polymer-based desensitizers with NaF and oxalic acid (OA) for preventing root demineralization via observation using micro-CT. Bovine root dentin surfaces were treated with coating materials: no treatment; MS0(+) (MS Coat One ® ); MS3000(+) (MS Coat ® ); MS0(−); MS3000(−); MS7000(+/−); fluoride gel (NaF9000). MS; MS polymer, 0-7000; NaF concentrations, (+/−); OA. The specimens were scanned using micro-CT before and after demineralization (pH4.5, 10 h). Following this, the mean mineral loss (ML) after demineralization was calculated, and the specimens were observed under a scanning electron microscope (SEM). The ML values of MS3000(+), MS7000(−), MS7000(+) and NaF9000 were significantly lower than the other groups (p<0.05). Under an SEM, a membrane structure was observed to have formed on the dentin surface in the presence of the MS, fluoride, and OA. The experimental polymer-based desensitizer with oxalic acid and a high concentration of fluoride is effective for preventing root demineralization.