The purpose of this publication is to analyze the spatial and temporal variability of the territorial sea baseline in sand bottom waterbodies, which were determined twice, in 2016 and 2018, by the Real Time Kinematic (RTK) method. This involves direct measurement of sea bottom coordinates on planned hydrographic sounding profiles using a Global Navigation Satellite System (GNSS) receiver mounted on a pole. The data were the basis for creating Digital Terrain Models (DTM), which were then used to determine the baseline for both measurement campaigns. Subsequently, terrain surface models were compared to determine bathymetry changes in the area under analysis, and an assessment was made of the baseline spatial position change over the previous two years. The measurements have shown considerable spatial and temporal variability of the baseline course along a short section of sandy beach. The territorial sea baseline was very unstable; in some places, it moved by even 20–25 m, landwards and seawards. Therefore, one can suppose that these changes are periodic, and one can conclude that the reliability of the baseline measurements can decrease quite quickly.