Graphene-enhanced Raman scattering (GeRS) on isotopically labelled bilayer and a single layer of pristine and partially hydrogenated graphene has been studied. the hydrogenated graphene sample showed a change in relative intensities of Raman bands of Rhodamine 6 G (R6G) with different vibrational energies deposited on a single layer and bilayer graphene. the change corresponds qualitatively to different doping of graphene in both areas. Pristine graphene sample exhibited no difference in doping nor relative intensities of R6G Raman peaks in the single layer and bilayer areas. Therefore, it was concluded that strain and strain inhomogeneities do not affect the GERS. Because of analyzing relative intensities of selected peaks of the R6G probe molecules, it is possible to obtain these results without determining the enhancement factor and without assuming homogeneous coverage of the molecules. furthermore, we tested the approach on copper phtalocyanine molecules. Enhancement of the signal in spectroscopy has crucial importance for detection and study of a low amount of species. For Raman spectroscopy, the surface-enhanced Raman scattering (SERS) technique is widely used 1 enabling even single-molecule detection 2. One of the restrictions of this approach is the limited stability of the metals that are needed to achieve signal enhancement 3. Recently, it was observed that graphene itself can provide significant enhancement of the Raman signal and the so-called graphene-enhanced Raman scattering (GERS) 4-6 was established. Note that both SERS and GERS can contribute to the molecular Raman signal together 7. Apart from the relatively good chemical stability of graphene, it was also found that graphene quenches photoluminescence 8 , which is important for practical experiments. The GERS was observed for various molecules 9-11 and also for other 2D materials, which were employed as active substrate 12. Furthermore, it was shown that the enhancement can be tuned by changing the Fermi energy of graphene (modified by the electrical field effect) 13 , by substitutional doping with heteroatoms 14,15 , or by chemical functionalization 16,17. More detailed studies demonstrated that the enhancement is also a function of the phonon energy of the specific vibration and also laser excitation energy 10. The observed effects were rationalized by a simple theoretical approach taking into account several different resonance processes 18. It was already shown previously that different doping of graphene induced by functionalization leads to a change in the relative intensities of individual GERS peaks of the probe molecules 16. The overall GERS enhancement depends on the laser excitation energy, lowest unoccupied molecular orbital (LUMO), and highest occupied molecular orbital (HOMO) energies of the probe molecules, the vibrational energy of the actual molecular Raman mode, and on the Fermi energy of graphene 18. Specifically: