“…Changes in stream habitat caused by deforestation have been observed in several studies (Allan & Castillo, ; Leitão et al, ; Molina et al, ; Scott & Helfman, ), but most of these studies were developed at smaller scales and without a biogeographical comparative approach, such as the one applied in this study. Native forest plays a vital role in physical channel heterogeneity by supplying large wood, branches, litter and roots to aquatic systems (Allan, ; Jackson et al, ). These structures are responsible for creating mesohabitats and microhabitats along stream channels, and for increasing marginal and instream habitat complexity (Harvey, Henshaw, Parker, & Sayer, ), which can provide habitat for the establishment of additional and different fish species (Angermeier & Karr, ; Pettit et al, ; Wright & Flecker, ).…”