Several different in vitro binding assays show that the estrogen receptor from rabbit uterus interacts selectively with purified histones from calf thymus. The estrogen receptor binds strongly to histones H2B and H2A, moderately to histones H3 and H4, and poorly to histone HI. In the presence of histones H2B or H2A, the position at which the estrogen receptor focuses in an isoelectric gradient is shifted to a more basic zone. Kinetic experiments show that, if histone H2B is bound to a DNA, the estrogen receptor dissociates more slowly from that DNA. The portion of the estrogen receptor molecule required for binding to histone H2B is relatively stable to tryptic digestion; in contrast, the portion of the receptor molecule responsible for DNA binding is promptly lost during limited tryptic digestion. These in vitro findings suggest that the mechanism by which the estrogen receptor selectively alters gene expression may involve specific contacts with histone molecules.Steroid hormone receptors are regulatory proteins that can migrate from cytoplasm to nucleus and somehow alter the expression of specific genes (1-3). Although the precise nature of the interaction between steroid receptors and the genome remains unclear, many studies suggest that DNA and chromosomal proteins play an important role in the binding of the receptor complex to the nucleus (2-11). In particular, steroid hormone receptors can bind to isolated DNA in vitro (3-9). Yet, in vivo, virtually all the DNA in the eukaryotic nucleus is folded by histones into nucleosomes (1-14). Very little is known about how the receptor might recognize histone . Such recognition could occur in at least two general, nonexclusive ways. First, the receptor might recognize the presence (or absence) of critical histone molecules directly via a histone'receptor interaction. Alternatively, the receptor might not make direct contact with the histones, but the histones could induce changes in the secondary and tertiary structure of DNA and these changes could then serve as partial determinants of recognition. The limited interaction of steroids with histones (15, 16) could be attributed, at least in part, to trace amounts of steroid hormone receptors "contaminating" the histone fractions (17,18). Subsequent studies have shown that steroid hormone receptors can bind to histones and protamines in vitro (19)(20)(21)(22)(23), but these studies have often implied that the receptor-histone interactions were nonspecific.To explore the possibility ofdirect and specific receptor-histone interactions, we have used the estrogen receptor from rabbit uterus to address the following questions: (i) Does the estrogen receptor bind to histones? If so, do preferential interactions occur with certain histones? (ii) Do histones affect the physicochemical properties ofthe estrogen receptor? (iii) Do histones influence the binding of the estrogen receptor to DNA? (iv) Where on the estrogen receptor is the histone recognition site?