Linum usifafissimum protoplast-derived colonies that are cultured in auxin-supplemented medium and immobilized in Ca2+-alginate matrix form round colonies that develop into polarized, embryo-like structures. On the other hand, protoplast-derived colonies that are immobilized i n agarose do not show an organized morphogenetic response, and unique, ionically bound cell-wall protein patterns match this response. Although only slight differences in neosynthesized or total constitutive polypeptides are observed, dramatic changes in ionically bound cell-wall proteins are seen. I n protoplasts grown on Ca'+-alginate-solidified, auxin-containing medium, several basic polypeptides were strongly induced and were found tightly bound t o the cell wall. In contrast, these basic proteins were found only weakly bound to the walls of protoplasts grown on agarose-solidified, auxin-containing medium or on Ca2+-alginatesolidified, auxin-free medium, i n which they were released into the medium. Our results suggest that plant cells can perceive and respond to the adjacent extracellular matrix, since we show that the growth of flax cells on Ca*+-alginate i n the presence of auxincontaining medium may promote the binding of specific proteins to the walls. This establishes a direct correlation of an embryo-like morphogenesis with ionically bound cell-wall basic proteins in flax protoplasts grown on Ca'+-alginate-solidified, auxin-containing medium.Virtually any cell can be immobilized (Nussinovitch et al., 1994). However, the gentlest methods that allow the best cell viability must be used, and this is achieved by using agar-type polysaccharides, including agarose and alginate, a family of co-polymers, that are most frequently used for plant cell entrapment.Flax protoplasts immobilized in alginate behave differently than those immobilized in agarose. We investigated the effects of agarose and alginate matrices on the morphogenetic response of phytohormone-controlled flax protoplast-derived cells that were obtained at optimized concentrations of growth regulators (5.5 p~ 2,4-D, 2.45 p~ NAA, 3.45 p~ BA, and 1.25 PM zeatin). We observed that cell colonies in agarose lacked defined outlines, since the clumps of actively dividing cells were surrounded by cells in an advanced state of lysis. In contrast, in alginate it was possible to observe the presence of compact and spherical colonies with actively dividing cells, as well as a periplasmic space with a very sinuous cell wall .Because of the presence of negative charges, Ca2+-alginate could affect the secretion of wall polysaccharides, thus modifying the composition and architecture of the newly formed walls, which has been reported for the increase of alkaloid synthesis by Coffea arabica cells (Haldimann and Brodelius, 1987). Indeed, it was demonstrated that alginate-induced colony differentiation is concomitant with a specific spatial and temporal distribution of acidic, methylesterified, and probably acetylated pectins (David et al., 1995a) by using the monoclonal antibody 2F4 (Liners ...