2006
DOI: 10.1016/j.cad.2006.07.007
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Interaction interfaces in proteins via the Voronoi diagram of atoms

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Cited by 27 publications
(14 citation statements)
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“…The bisector surface, which is a subset of the medial axis, has been applied in representing protein interactions [Kim et al 2006]. Instead of dealing with specific structures like proteins, we define a more general metric, which can compare the spatial relationship between interacting parts by measuring the features of the IBS.…”
Section: Analysis Of 3d Objects and Scenesmentioning
confidence: 99%
See 1 more Smart Citation
“…The bisector surface, which is a subset of the medial axis, has been applied in representing protein interactions [Kim et al 2006]. Instead of dealing with specific structures like proteins, we define a more general metric, which can compare the spatial relationship between interacting parts by measuring the features of the IBS.…”
Section: Analysis Of 3d Objects and Scenesmentioning
confidence: 99%
“…The Voronoi diagram has been applied in indexing and recognizing the relationships of proteins in the area of biology [Kim et al 2006]. In a similar manner to the Voronoi diagram, the IBS is the collection of points that are equidistant from at least two objects in the scene.…”
Section: Introductionmentioning
confidence: 99%
“…The interaction network helps to understand various aspects of the life process in a cell. In the BetaMol, the interaction interface between two interacting proteins is defined as a geometric mid-surface between them (30) . The mid-surface is efficiently computed from the Voronoi diagram of a protein complex by collecting Voronoi faces which are defined by two atoms belonging to different proteins.…”
Section: Interaction Interfacementioning
confidence: 99%
“…In other words, we want to find a point in the intersection of V p and two balls. Such a point may help in trimming parts of the interaction interface using a spherical probe [77].…”
Section: The Settingmentioning
confidence: 99%
“…In molecular biology [58,77,106] the site p represents the center of a spherical atom (or molecule) whose van der Waals radius is w p . Hence d p (x) is the distance from x to the sphere for each x outside the corresponding ball.…”
Section: Examplementioning
confidence: 99%