In the present work, a set of ligand-and receptor-based 3D-QSAR models were developed to explore the structure-activity relationship of 109 benzimidazole-based interleukin-2-inducible T-cell kinase (ITK) inhibitors. In order to reveal the requisite 3D structural features impacting the biological activities, a variety of in silico modeling approaches including the comparative molecular field analysis (CoMFA), comparative molecular similarity indices analysis (CoMSIA), docking, and molecular dynamics were applied. The results showed that the ligand-based CoMFA model (Q 2 5 0.552, R
IntroductionT cell, also known as T lymphocyte, is a type of white blood cell that is of key importance to the immune system. [1] T-cell plays a central role in cell-mediated immunity which can be found in nearly any tissue at any time. By the presence of a Tcell antigen receptor (TCR) on the cell surface, T-cells are distinguished from other lymphocytes like the B cells and natural killer cells (NK cells), but are most concentrated in the lymphoid organs.[1] The activation of T-cell is critical for the initiation and regulation of the immune response, which leads to the development of cell-mediated immune mechanisms through the action of cytotoxic T-cell as well as by the engagement of accessory cells including macrophages.[2]To activate T-cell, the recognition of TCR is a necessity [3] that it leads to the fast recruitment and activation of three kinds of nonreceptor tyrosine kinases, the Src, Syk, and Tec families. [4] Among the Tec family, the interleukin-2-inducible Tcell kinase (ITK), a nonreceptor tyrosine kinase expressed primarily in hematopoietic cells, serves as an important mediator of antigen receptor signaling in lymphocytes. [2] For ITK, significant attention has been given to its activation via TCR stimulation. Once activated, ITK undergoes cis autophosphorylation on Y180 in its SH3 domain, [2] and plays an important role in Tcell signaling and the production of various pro-inflammatory cytokines such as IL-2, IL-4, IL-5, IL-10, and IL-13. [5] Moreover, ITK has been shown to play an essential role in the development of T cell dependent late phase responses of allergic asthma. [6] In research with ITK deficient mice reduced lung inflammation, mucous production and airway hyper responsiveness were observed in an ovalbumin-induced allergic asthma model. [7] Similar results were reported with a selective ITK inhibitor, which indicated the important role of ITK kinase activity in inflammatory diseases. [8] Therefore, tyrosine kinase ITK is regarded as a promising and an excellent potential therapeutic target for T cell-mediated diseases. The earliest report of selective ITK inhibitors came from researchers at Bristol-Myers Squibb.[5] These inhibitors have been tested in vitro on the human Jurkat T cell line and shown to specifically inhibit ITK and block the tyrosine phosphorylation and activation of phospholipase-Cc1. [9] Although these inhibitors come in handy, more studies are needed to test their efficacy, stability, and ...