Thickness dependent thermal conductivity measurements were made on aluminum nitride (AlN) thin films grown by two methods on the (0001) surfaces of silicon carbide (SiC) and sapphire substrates with differing surface roughness. We find that the AlN itself makes a small contribution to the overall thermal resistance. Instead, the thermal boundary resistance (TBR) of 5.1 6 2.8 m 2 K/GW between the AlN and substrate is equivalent to 240 nm of highly dislocated AlN or 1450 nm of single crystal AlN. An order-of-magnitude larger TBR was measured between AlN films and SiC substrates with increased surface roughness (1.2 nm vs. 0.2 nm RMS). Atomic resolution TEM images reveal near-interface planar defects in the AlN films grown on the rough SiC that we hypothesize are the source of increased TBR. Nitride semiconductors are essential for blue/green light emitting diodes (LEDs) and high electron mobility transistors (HEMTs). LEDs are now being pushed to high power for lighting applications causing considerable heat generation due to Joule heating and inefficiencies in light production. 1 HEMTs are essential to high-power and high-speed switching operations that generate heat as a byproduct. 2,3 While thermal packaging is essential to minimize operating temperatures, nearly half of the total thermal resistance comes from the nitride device itself. 2,3 Experiments on bulk nitrides show that thermal transport is phonon-dominated. [4][5][6][7] Internal thermal resistance of nitride devices is complicated by the presence of interfaces between films and defects within films that scatter phonons and suppress thermal conductivity below bulk values.Non-native silicon carbide (SiC) and sapphire substrates are used for the commercial growth of nitride films because gallium nitride (GaN) and aluminum nitride (AlN) substrates are not yet economically viable. Growth is initiated with an AlN nucleation layer because direct growth of GaN on these substrates is not favorable at high temperatures. Due to a mismatch in the lattice parameters (a) of AlN (a AlN ¼ 3.07 Å ) with SiC (a SiC ¼ 3.11 Å ) and sapphire (a Sapp ¼ 4.785 Å ), dislocations and surface defects form at the interface and impact the quality of subsequent growth. Though SiC and AlN have a small mismatch (1%), their high elastic moduli require stress relief through such defect formation. 8,9 Prior studies agree that the AlN nucleation layer is a dominant thermal resistance in both LED 10 and HEMT architectures. 2,3,11,12 The source of this thermal resistance, however, is as yet experimentally unresolved as the total thermal resistance R T consists of three components: (1) the AlN/substrate TBR (TBR sub ), (2) the AlN intrinsic resistance L AlN /k AlN (where L is film thickness and k is thermal conductivity), and (3) the GaN/AlN TBR. Our prior study suggests that TBR sub is largest for AlN films grown on mechanically polished (MP) SiC substrates. 5 Nonetheless, it is unclear whether this conclusion holds for SiC vs. sapphire substrates, different growth techniques, or varied su...