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↓ Clostridiales order, Peptostreptococcus spp., Lachnoanaerobaculum spp . 62 | Walnuts | 20, male Fischer 344 rats (mature, ˃250 g) n = 10, walnut n = 10, replacement Fecal samples collected from descending colon and stored at −80°C | 10 weeks | DNA extraction using QIAamp DNA Stool Kits PCR Illumina MiSeq sequencing platform Microbial analysis-QIIME | ↑ species diversity ↑ Firmicutes ↓ Actinobacteria, Cyanobacteria ↑ Oscillospira , Lachnospiraceae , and Turicibacter ↑ Lactobacillus, Ruminococcaceae and Roseburia (all probiotic type bacteria) ↓ Bacteroides ↓ Carnobacteriaceae ↑ Moyella , Peptococeaceae , and Ruminococcaecea ↓ Anaerotruncus, Dehalobecteriaceae , Blautia and Coprococus ↑ Streptophyta order ↓ 4COD-2 ↓ Bacteroidetes, Proteobacteria , and Tenericutes ↓ Alphaproteobacteria and Gammaproteobacteria | 63 |
Black raspberries ( Rubus occidentalis ) (BRB) | 32, 4 to 5-week-old, male Fischer 344 rats n = 8, control n = 8, 5% whole BRB powder n = 8, 0.2% BRB anthocyanins n = 8, 2.25% BRB derived residue Fecal material collected at weeks 0, 3 and 6. | 6 weeks | Bacterial DNA in feces was extracted using powerbead tubes V1–V3 regions of the bacterial 16 S gene were amplified Roche 454 pyrosequencing Data processing using QIIME | time-dependent changes in bacterial diversity within each diet whole BRB powder: ↑ Anaerostipes , Ruminococcus, Akkermansia and Coprobacillus , ↓ Acetivibrio at weeks 3 and 6 transiently ↑ Allobaculum , and a transiently ↓ Anaerotruncus at week 3 BRB-derived anthocyanin fraction: ↑ Anaerovorax and Dorea , ↓ Bifidobacterium and Lactococcus at weeks 3 and 6 transiently ↑ Asaccharobacter , and a transiently ↓ Prabacteroides at week 3 BRB-derived residue fraction: ↑ Anaerotruncus, Coprobacillus, Desulfovibrio, Victivallis , and Mucispirilum ↓ Streptococcus, Turicibacter , and Acetivibrio at weeks 3 and 6 transientl... |
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