Long-term and high-concentration heavy-metal contamination strongly influences the microbiome and functional genes in Yellow River sediments

Chen, Yong; Jiang, Yiming; Huang, Haiying; Mou, Lichao; Ru, Jinlong; Zhao, Jianhua; Xiao, Shan

doi:10.1016/j.scitotenv.2018.05.109

Cited by 294 publications

(107 citation statements)

References 68 publications

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“…The Ace (https://www.mothur.org/wiki/Ace) and Chao1 (https://www.mothur.org/wiki/Chao) indexes were used to represent the community abundance, while the Shannon (https://www.mothur.org/wiki/Shannon) and Simpson (https://www.mothur.org/wiki/Simpson) indexes were used to represent the species richness and diversity of the fungal community [43,44]. Additionally, the similarities analysis (ANOSIM) and heatmap analysis were calculated in the vegan package of R language [45,46] and the Unifrac distance calculation was performed for fungal beta diversity comparisons. The figures were generated using Origin 2019b (Origin Lab Corporation, Northampton, MA, USA).…”

Section: Data Analysesmentioning

confidence: 99%

Effects of Two Trichoderma Strains on Plant Growth, Rhizosphere Soil Nutrients, and Fungal Community of Pinus sylvestris var. mongolica Annual Seedlings

Halifu

Deng

Song

et al. 2019

Forests

123

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Trichoderma spp. are proposed as major plant growth-promoting fungi that widely exist in the natural environment. These strains have the abilities of rapid growth and reproduction and efficient transformation of soil nutrients. Moreover, they can change the plant rhizosphere soil environment and promote plant growth. Pinus sylvestris var. mongolica has the characteristics of strong drought resistance and fast growth and plays an important role in ecological construction and environmental restoration. The effects on the growth of annual seedlings, root structure, rhizosphere soil nutrients, enzyme activity, and fungal community structure of P. sylvestris var. mongolica were studied after inoculation with Trichoderma harzianum E15 and Trichoderma virens ZT05, separately. The results showed that after inoculation with T. harzianum E15 and T. virens ZT05, seedling biomass, root structure index, soil nutrients, and soil enzyme activity were significantly increased compared with the control (p < 0.05). There were significant differences in the effects of T. harzianum E15 and T. virens ZT05 inoculation on the growth and rhizosphere soil nutrient of P. sylvestris var. mongolica (p < 0.05). For the E15 treatment, the seedling height, ground diameter, and total biomass of seedlings were higher than that those of the ZT05 treatment, and the rhizosphere soil nutrient content and enzyme activity of the ZT05 treatment were higher than that of the E15 treatment. The results of alpha and beta diversity analyses showed that the fungi community structure of rhizosphere soil was significantly different (p < 0.05) among the three treatments (inoculated with T. harzianum E15, T. virens ZT05, and not inoculated with Trichoderma). Overall, Trichoderma inoculation was correlated with the change of rhizosphere soil nutrient content.

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Section: Data Analysesmentioning

confidence: 99%

Effects of Two Trichoderma Strains on Plant Growth, Rhizosphere Soil Nutrients, and Fungal Community of Pinus sylvestris var. mongolica Annual Seedlings

Halifu

Deng

Song

et al. 2019

Forests

123

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“…The normality test was performed by Kolmogorov-Smirnov test for each trace metal; One-sample T-test was used to compare the concentrations of heavy metals in individual environmental media with background value; The inter group difference was compared with the independent sample T-test; Pearson correlation analysis was combined with principal component analysis (PCA) to identify the source of pollution. Prior to this, the validity of PCA was tested by Kaiser-Meyer-Olkin (KMO) values (>0.5) and Bartlett Sphericity test (p < 0.01) [12,19], All mathematical and statistical calculations were performed by Excel 2016, Origin 8.6 and SPSS 21.0, with sample distributions plotted using ArcGIS 10.2.…”

Section: Discussionmentioning

confidence: 99%

“…Compared to the water analysis, the relative concentrations of the heavy metals in sediment still indicated that Zn and Cd were at the extremes of the distribution; however, some differences were seen in the relative ranking of the other 4 metals. Heavy metals in sediments tend to be the result of long-term accumulation [12,13], while heavy metal contents in surface water more closely reflect contemporary pollution within the catchment, thus explaining the relative differences seen between water and sediments. Compared with sediments in other rivers (Table S4), the contents of Cu, Cr, Zn, Ni and Pb in the Songhua River were significantly lower than those in the Yangtze River (p < 0.01) [11], while the concentrations of heavy metals were higher than those in many major European rivers such as the Ebro River and Seine River [41,42].…”

Section: Concentrationmentioning

confidence: 99%

“…However, rapid development of industry, agriculture and urbanization often results in polluting discharges (e.g., wastewater, agricultural run-off) to watercourses that impact water quality, with knock-on implications for ecosystem and human health [3,8,9]. Sediments are generally considered as both "source" and "sink" for most heavy metals and other pollutants in the water environment, thus measurements made in sediments can be a useful indicator of potential ecological risk to the aquatic environment [10][11][12][13]. Similarly, soil can also be an important storage reservoir of pollutants, which can enter soil through wastewater discharge, atmospheric deposition and fertilizer application [14][15][16].…”

Section: Introductionmentioning

confidence: 99%

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Concentrations, Possible Sources and Health Risk of Heavy Metals in Multi-Media Environment of the Songhua River, China

Cui

Zhang

et al. 2020

IJERPH

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Heavy metal pollution in the river environment has been a source of widespread interest due to potential threats to human health and ecosystem security. Many studies have looked at heavy metal pollution in the context of single source-pathway-receptor relationships, however few have sought to understand pollution from a more wholistic multi-media perspective. To investigate potential risks in a more wholistic way, concentrations of six heavy metals (Cd, Cr, Ni, Cu, Zn and Pb) were detected in multi-media (water, sediment and riparian soil) collected from 14 sampling sites in the main stream of the Songhua River. Chemical analyses indicated that the average concentration of heavy metals in water followed: Zn > Cr > Cu > Pb > Ni > Cd, with a different trend observed in sediments and riparian soil: Zn > Cr > Ni > Pb > Cu > Cd. The potential risk was evaluated using the heavy metal pollution index (HPI), Nemerow pollution index (P N ), hazard index (HI) and carcinogenic risk (CR) metrics. Results showed that all HPI values were lower than the critical level of 100 indicating that the levels of these targeted heavy metals were within drinking water safety limits. The P N indicated that both sediment (2.64) and soil (2.95) could be considered "moderately polluted", with Cd and Zn providing the most significant contributions. A human health risk assessment suggested that the non-carcinogenic risks were within acceptable levels (HI < 1), as was the cancer risk associated with dermal adsorption (CR <10 −6 ). However, the CR associated with ingestion exposure (4.58 × 10 −6 ) exceeded the cancer risk threshold (10 −6 ) indicative of elevated cancer incidence in exposed populations. Health-risk estimates were primarily associated with Cd in the Songhua River. Source apportionment was informed by Pearson correlation analysis coupled with principal component analysis (PCA) which indicated that Cu was mainly derived from natural (geogenic) sources; Cr and Ni were associated with industrial emissions; Pb might be derived from agricultural and transportation sources; Zn might be from industrial, agricultural activities and transportation; while Cd is likely from industrial and agricultural emissions. The source apportionment information could provide the basis for a risk-management strategy focused on reducing Cd and Zn emissions to the riverine environment. Results from this study will provide the scientific knowledge that is needed for measuring and controlling heavy metals sources and pollution characteristics, and identifying the potential cancer risk with different exposure pathways, as well as making effective environmental management policies at catchment or regional scales.

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“…Total soil DNA was extracted following the instructions of E.Z.N.A ® soil (Omega BioTek, Norcross, GA, USA) with 1% gel electrophoresis, and NanoDrop2000 was used to examine the DNA concentration and purity. The DNA samples were stored at −80 • C [38,39].…”

Section: Dna Extractionmentioning

confidence: 99%

Effects of Sphaeropsis Blight on Rhizosphere Soil Bacterial Community Structure and Soil Physicochemical Properties of Pinus sylvestris var. mongolica in Zhanggutai, China

Halifu

Deng

Song

et al. 2019

Forests

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Pinus sylvestris var. mongolica is an important tree species for ecological construction and environmental restoration owing to its rapid growth rate and excellent stress resistance. Pinus sylvestris var. mongolica sphaeropsis blight is a widespread disease caused by Sphaeropsis sapinea. This study was focused on non-infected (CK) and infected (SS) Pinus sylvestris var. mongolica plants in Zhanggutai area, Liaoning Province, China. Illumina high-throughput sequencing based on the templates of sequencing-by-synthesis working with reversible terminators is a widely used approach. In the present study, systematic differences in relationships among rhizosphere soil physicochemical properties, bacterial community structure, diverse bacterial genera, and alpha diversity indices between the two categories were evaluated. The current findings are as follows: (1) Shannon’s index of SS soil was significantly higher than CK, and it was significantly lower in May than July and September (p < 0.05). (2) Non-metric multidimensional scaling (NMDS) showed a difference in bacterial community structure during May (spring), July (summer), and September. (3) At the phylum level, no significant difference was found in the bacterial genera between CK and SS soil for three seasons; however, at the genus level, there were about 19 different bacterial genera. The correlation studies between 19 different bacterial genera and environmental factors and α-diversity indicated that bacterial genera of non-infected and infected Pinus sylvestris var. mongolica were distributed differently. The bacterial genera with CK were positively correlated with soil physicochemical properties, while a negative correlation was found for SS. In conclusion, the differences in nutrient and microbial community structure in the rhizosphere soil of Pinus sylvestris var. mongolica are the main causes of shoot blight disease.

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Long-term and high-concentration heavy-metal contamination strongly influences the microbiome and functional genes in Yellow River sediments

Cited by 294 publications

References 68 publications

Effects of Two Trichoderma Strains on Plant Growth, Rhizosphere Soil Nutrients, and Fungal Community of Pinus sylvestris var. mongolica Annual Seedlings

Effects of Two Trichoderma Strains on Plant Growth, Rhizosphere Soil Nutrients, and Fungal Community of Pinus sylvestris var. mongolica Annual Seedlings

Concentrations, Possible Sources and Health Risk of Heavy Metals in Multi-Media Environment of the Songhua River, China

Effects of Sphaeropsis Blight on Rhizosphere Soil Bacterial Community Structure and Soil Physicochemical Properties of Pinus sylvestris var. mongolica in Zhanggutai, China

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