24Pseudomonas aeruginosa frequently resides among ethanol-producing microbes, 25 making its response to these microbially-produced concentrations of ethanol relevant to 26 understanding its biology. Our ranscriptome analysis found that the genes involved in 27 trehalose metabolism were induced by low concentrations of ethanol, and levels of intracellular 28 trehalose increased significantly upon growth with ethanol. The increase in trehalose was 29 dependent on the TreYZ pathway, but not other trehalose metabolic enzymes TreS or TreA. 30The sigma factor AlgU (AlgT), a homolog of RpoE in other species, was required for increased 31 expression of the treZ gene and trehalose levels, but induction was not controlled by the well-32 characterized proteolysis of its antisigma factor MucA. Growth with ethanol led to increased 33SpoT-dependent (p)ppGpp accumulation, which stimulates AlgU-dependent transcription of 34 treZ and other AlgU-regulated genes through DksA, a (p)ppGpp and RNA polymerase binding 35 protein. Ethanol stimulation of trehalose also required acylhomoserine lactone (AHL)-mediated 36 quorum sensing, as induction was not observed in a ∆lasR∆rhlR strain. A network analysis 37 using a model, eADAGE, built from publicly available P. aeruginosa transcriptome datasets (1) 38 provided strong support for our model that treZ and co-regulated genes are controlled by both 39AlgU and AHL-mediated QS (QS). Consistent with (p)ppGpp and AHL-mediated quorum 40 sensing regulation, ethanol, even when added at the time of culture inoculation, stimulated treZ 41 transcript levels and trehalose production in cells from post-exponential phase cultures but not 42 from exponential phase cultures. These data highlight the integration of growth and cell density 43 cues in the P. aeruginosa transcriptional response to ethanol. 44
Importance 45Pseudomonas aeruginosa is often found with bacteria and fungi that produce 46 fermentation products including ethanol. At concentrations similar to those produced by 47 environmental microbes, we found that ethanol stimulated expression of trehalose biosynthetic 48 genes and cellular levels of trehalose, a disaccharide that protects against environmental 49 stresses. The induction of trehalose by ethanol required the alternative sigma factor AlgU 50 through DksA and SpoT-dependent (p)ppGpp. Trehalose accumulation also required AHL 51 quorum sensing and only occurred in post-exponential phase cultures. This work highlights 52 how cells integrate cell-density and growth cues in their responses to products made by other 53 microbes and a reveals a new role for (p)ppGpp in the regulation of AlgU activity.
55Pseudomonas aeruginosa is a ubiquitous Gram-negative bacterium that can cause 56 acute and chronic infections in a broad range of hosts. P. aeruginosa frequently causes 57 chronic infections in individuals with the genetic disorder cystic fibrosis (CF). Diverse bacterial 58 and fungal taxa often co-infect with P. aeruginosa in CF airways (2-6), and many of these taxa 59 are robust fermenters c...