Maternal Phylogenetics of Some Anatolian Cattle Breeds

Doğan, Müge; Nizamlıoğlu, Mustafa; Özşensoy, Yusuf; Kurar, Ercan; Bulut, Zafer; Altunok, Vahdettin; Işık, A.; Çamlidağ, Aysun

doi:10.13189/ujar.2017.050201

Cited by 3 publications

(5 citation statements)

References 13 publications

(28 reference statements)

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“…The lack of private alleles in SAR and NSY may be an indicator of gene flow between them. Similar clustering was observed in studies carried out by mtDNA (Özdemir & Doğru, 2017;Doğan et al, 2017) and autosomal microsatellite markers (Özşensoy et al, 2010) analyses.…”

Section: Discussionsupporting

confidence: 84%

“…Fifteen cattle breeds raised in Anatolia were declared extinct (FAO, 2018) Studies have been carried out to investigate genetic variation and genetic relationships among Turkish native cattle breeds by unipaternal markers and autosomal genetic markers. Moreover, these breeds were investigated by Y chromosomal markers (Özşensoy et al, 2014), mtDNA (Özdemir & Doğru, 2009;Doğan et al, 2017), random amplified polymorphic DNA (RAPD) (Güneren et al, 2010) and microsatellite (Özkan, 2005; Özşensoy et al, 2010) markers. In this study, the authors aimed to estimate the genetic diversity of five Turkish native breeds by autosomal microsatellite markers.…”

Section: Introductionmentioning

confidence: 99%

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Genetic diversity and population structure of Turkish native cattle breeds

Öner¹,

Yılmaz²,

Eriş³

et al. 2019

SA J. An. Sci.

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Cattle are an important livestock species for human life, but certain breeds are at risk of extinction. Maintaining genetic diversity plays an important role in sustainable breeding and conservation programmes in farm animals. The aim of this study was to determine genetic diversity among five Turkish native cattle breeds. A total of 199 Turkish native cattle of the Native Southern Yellow (n = 40), South Anatolian Red (n = 40), Anatolian Grey Cattle (n = 40), Native Black Cattle (n = 39) and East Anatolian Red (n = 40) breeds were investigated using 22 autosomal microsatellite markers. The analysis revealed considerable genetic variation among these breeds. All loci were polymorphic, and a total of 545 alleles were found. Among these loci, only INRA032 was at Hardy-Weinberg equilibrium. Thirty-four private alleles with frequencies greater than 5% were found. Expected heterozygosity and polymorphic information content indexes were 0.87 and 0.88, respectively. Native Southern Yellow, South Anatolian Red and Native Black Cattle breeds were closely related.

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Section: Discussionsupporting

confidence: 84%

Section: Introductionmentioning

confidence: 99%

Genetic diversity and population structure of Turkish native cattle breeds

Öner¹,

Yılmaz²,

Eriş³

et al. 2019

SA J. An. Sci.

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“…Naturally, genetic diversity is expected to decline as the distance from the domestication centres increases, mainly because a small percentage of the gene pool is distributed to other regions by human-mediated migration. High genetic diversity was also reported by Dogan et al (2017), who revealed mtDNA diversity in all native Turkish cattle breeds (n = 279) via the D-loop region. Nucleotide diversity was reported to range from 0.013 (TGS) to 0.018 (EAR), as well as haplotype diversity varying between 0.983 (TGS) and 0.998 (SAY).…”

Section: Genetic Diversity and Haplogroup Classification In Native Tu...supporting

confidence: 62%

“…This finding confirms the genetic origin of native Turkish cattle breeds which originated from Bos taurus. Phylogenetic re-lationships between native Turkish and other cattle breeds were also assessed by Özdemir and Dogru (2009) and Dogan et al (2017). Native Turkish cattle breeds were reported to be clearly distinct from cattle breeds raised in India, Africa and Japan, while they were located close to European cattle breeds such as HF, SIM, BS and HER (Özdemir and Dogru, 2009).…”

Section: Phylogenetic Relationships and Indicine Admixture In Native ...mentioning

confidence: 99%

Mitochondrial DNA diversity of D-loop region in three native Turkish cattle breeds

et al. 2023

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Abstract. This study aimed to reveal the genetic variability of mitochondrial DNA (mtDNA) displacement-loop (D-loop) region in 62 animals belonging to three native Turkish cattle breeds, namely Anatolian Black (AB), East Anatolian Red (EAR) and Zavot (ZAV), and to conduct phylogenetic relationship analyses to obtain deeper information on their genetic origin and breeding history by comparison of 6 taurine and 11 indicine breeds, together with 66 polymorphic sites, a total of 31 haplotypes, of which 15, 10 and 6 were detected in AB, EAR and ZAV, respectively. Mean nucleotide and haplotype diversity were 0.01 and 0.891, respectively, whereas the genetic differentiation derived from Wright's FST index was 0.174 across the breeds. A significant level of total variation (17.42 %) was observed among breeds in molecular variance analysis. Six main haplogroups (T, T1, T2, T3, Q and I2) were detected in Anatolian cattle populations, where T3 was the most frequent among breeds (43.55 %), whereas I2, an indicine specific haplogroup, was observed only in ZAV. At the breed level, phylogenetic analyses supported by 198 sequences of 17 cattle breeds and 3 outgroup species retrieved from the GenBank clustered native Turkish cattle breeds with the taurine group rather than the indicine one, as expected. However, indicine admixture at low frequency (8.89 %) was detected in the ZAV breed for the first time due to more likely gene flow from indicine cattle breeds raised in neighbour countries, particularly Iran. This finding should be further investigated in all native Turkish and indicine cattle breeds from nearby countries to clarify gene flow and indicine admixture in Anatolian cattle.

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“…The historical and important role of Bali cattle and SO cattle towards the existence of current breeds in Indonesia evidenced their high adaptability to tropical condition. However, the genetic information of Bali cattle (Bos javanicus) has remained deficient in comparison with that of other breeds such as Bos taurus and Bos inducus (Sharma et al, 2015;Doğan et al, 2017). Regarding studies on genetic diversity and phylogenetic, mitochondrial DNA genome could be the best approach (Rehman et al, 2017) compared to markers from the nuclear genome (Van Marle-Köster and Nel, 2003;Viryanski, 2019).…”

Section: Introductionmentioning

confidence: 99%

Diversity of D-loop mitochondrial DNA (mtDNA) sequence in Bali and Sumba Ongole cattle breeds

Jakaria

Musyaddad

Rahayu

et al. 2019

J. Indonesian Trop. Anim. Agric.

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This study aimed to investigate the diversity of the complete sequence of D-loop mitochondrial DNA (mtDNA) in Bali and Sumba Ongole (SO) cattlebreeds. A total of 24 blood samples were collected from Bali cattle (19 heads) and SO cattle (5 heads), and were extracted and then analyzed to obtain the sequence of D-loop mt DNA.Multiple alignments of the whole sequence of D-loop mtDNA were determined using clustal W. Genetic distance was calculated using a p-distance method, while the genetic tree was constructed using neighbor-joining (NJ) based on MEGA 6. Haplotype number, haplotype diversity (Hd) and nucleotide diversity (Pi) were analyzed using DnaSP version 6. As a result, the sequence of D-loop mtDNA in Bali cattle (921-1119 bp) and SO cattle (913 bp) was reported to have 8 and 4 haplotypes. Hd and Pi of Bali cattle reached 0.625±0.139 and 0.0266±0.0145, respectively, which wwere different from that of SO cattle, namely 0.900±0.1610 and 0.0064±0.0015, respectively. Specifically, we found 22 bp-repetitive nucleotide in Bali cattle, existing 3-9 times with a length of 66-198 bp present in D-loop mtDNA. This unique feature did not exist in SO cattle. Genetic distance and genetic tree determined according to sequence in hypervariability (HV-1) region of D-loop mtDNA (166 bp) resulted in satisfied separation, successfully classifying Bos javanicus, Bos indicus, and Bos taurus cluster.

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Maternal Phylogenetics of Some Anatolian Cattle Breeds

Cited by 3 publications

References 13 publications

Genetic diversity and population structure of Turkish native cattle breeds

Genetic diversity and population structure of Turkish native cattle breeds

Mitochondrial DNA diversity of D-loop region in three native Turkish cattle breeds

Diversity of D-loop mitochondrial DNA (mtDNA) sequence in Bali and Sumba Ongole cattle breeds

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