Periodic hole array phononic crystals (PnC) can strongly modify the phonon dispersion relations, and have been shown to influence thermal conductance coherently, especially at low temperatures where scattering is suppressed. One very important parameter influencing this effect is the period of the structure. Here, we measured the sub-Kelvin thermal conductance of nanofabricated PnCs with identical hole filling factors, but three different periodicities, 4, 8, and 16 µm, using superconducting tunnel junction thermometry. We found that all the measured samples can suppress thermal conductance by an order of magnitude, and have a lower thermal conductance than the previously measured smaller period, 1 µm and 2.4 µm structures. The 8 µm period PnC gives the lowest thermal conductance of all the samples above, and has the lowest specific conductance/unit heater length observed to date in PnCs. In contrast, coherent transport theory predicts that the longest period should have the lowest thermal conductance. Comparison to incoherent simulations suggests that diffusive boundary scattering is likely the mechanism behind the partial breakdown of the coherent theory.