Identification and quantification of microbial populations in activated sludge and anaerobic digestion processesEight different phenotypes were studied in an activated sludge process (AeR) and anaerobic digester (AnD) in a full-scale WWTP by means of fluorescent in situ hybridization (FISH) and automated FISH quantification software. The phenotypes were: ammonia-oxidizing bacteria (AOB), nitrite-oxidizing bacteria (NOB), denitrifying bacteria, phosphate-accumulating organisms (PAO), glycogen-accumulating organisms (GAO), sulfate-reducing bacteria (SRB), methanotrophic bacteria and methanogenic archaea. Some findings were unexpected: (a) Presence of PAO, GAO and denitrifiers in the AeR possibly due to unexpected environmental conditions caused by oxygen deficiencies or its ability to survive aerobically; (b) Presence of SRB in the AeR due to high sulfate content of wastewater intake and possibly also due to digested sludge being recycled back into the primary clarifier; (c) Presence of methanogenic archaea in the AeR, which can be explained by the recirculation of digested sludge and its ability to survive periods of high oxygen levels; (d) Presence of denitrifying bacteria in the AnD which cannot be fully explained because the nitrate level in the AnD was not measured. However, other authors reported the existence of denitrifiers in environments where nitrate or oxygen was not present suggesting that denitrifiers can survive in nitrate-free anaerobic environments by carrying out low-level fermentation; (e) The results of this paper are relevant because focus on the identification of nearly all the significant bacterial and archaeal groups of microorganisms with a known phenotype involved in the biological wastewater treatment.Keywords: microbial diversity, FISH, phenotype, activated sludge, anaerobic digester
IntroductionThe heart of a wastewater treatment plant (WWTP) is a dense microbial consortium in which organic and nutrient contaminants are removed, mainly by bacteria and archaea.There is, therefore, great interest in identifying the structure of this consortium and the functions of the groups of bacteria and archaea it is composed of.Many studies have investigated the diversity of microbial populations. Such studies now increasingly use molecular techniques that do not need the microorganisms to be isolated or cultivated, e.g. 16S rRNA analysis and fluorescence in situ hybridization (FISH). Other techniques such as microautoradiography-fluorescence in situ hybridization (MAR-FISH) have also been used to identify the bacterial community phylum level and phenotype in wastewater [1], along with other techniques such as polymerase chain reaction (PCR) combined with denaturing gradient gel electrophoresis (DGGE) [2], and pyrosequencing [3,4]. In other words, some studies using molecular techniques have been conducted to identify the microorganisms involved in the removal of nutrients such as phosphorus [5,6,7] and nitrogen [8,9,10,11,12,13], whilst other studies have focused on methanogenic archaea [14,15] and...