h Extraintestinal Escherichia coli (ExPEC), a heterogeneous group of pathogens, encompasses avian, neonatal meningitis, and uropathogenic E. coli strains. While several virulence factors are associated with ExPEC, there is no core set of virulence factors that can be used to definitively differentiate these pathotypes. Here we describe a multiplex of four virulence factor-encoding genes, yfcV, vat, fyuA, and chuA, highly associated with uropathogenic E. coli strains that can distinguish three groups of E. coli: diarrheagenic and animal-associated E. coli strains, human commensal and avian pathogenic E. coli strains, and uropathogenic and neonatal meningitis E. coli strains. Furthermore, human intestinal isolates that encode all four predictor genes express them during exponential growth in human urine and colonize the bladder in the mouse model of ascending urinary tract infection in higher numbers than human commensal strains that do not encode the four predictor genes (P ؍ 0.02), suggesting that the presence of the predictors correlates with uropathogenic potential.
Extraintestinal pathogenic Escherichia coli (ExPEC), a heterogeneous group of E. coli pathotypes defined by isolation from infections outside the intestinal tract, includes uropathogenic E. coli (UPEC), avian-pathogenic E. coli (APEC), and neonatal meningitis E. coli (NMEC) (20,32). ExPEC strains are a diverse group of pathogenic E. coli strains that cause disease in poultry and companion animals as well as humans (32). While many virulence factors are associated with ExPEC, no core set of virulence factors can unambiguously distinguish the ExPEC subgroups from one another. Therefore, strains can be designated UPEC, APEC, or NMEC only on the basis of the isolation source (20). Unlike diarrheagenic E. coli (DEC) strains, which are obligate intestinal pathogens, ExPEC strains can commensally colonize the human intestine; thus, the intestinal tract can serve as a reservoir for extraintestinal E. coli (20).This ExPEC reservoir is of particular importance for women with recurrent urinary tract infections (UTIs), as UPEC is the predominant cause of uncomplicated UTIs. It is estimated that over 50% of women will have a UTI in their lifetime; 25% will then experience a second UTI and 3% will have a third UTI within 6 months of the initial infection (5). One explanation for recurrence is that such a reservoir of UPEC in the gastrointestinal tract of this population of women is reintroduced to the urinary tract, allowing subsequent infections to occur. Indeed, UPEC clones persist long term as commensals within the intestinal tract and can even be shared among family members and household pets (13,24). A diagnostic test that could identify potential carriers of UPEC, therefore, would be beneficial for medical practitioners to determine a course for prevention of recurrent UTI. Identification of reservoirs of uropathogens could be used to identify at-risk populations and reduce disease transmission. Once carriers of UPEC are identified, the patients can be t...