The human reduced folate carrier (hRFC) facilitates membrane transport of folates and antifolates. hRFC is characterized by 12 transmembrane domains (TMDs). To identify residues or domains involved in folate binding, we used substituted cysteine (Cys) accessibility methods (SCAM) with sodium (2-sulfonatoethyl)methanethiosulfonate (MTSES). We previously showed that residues in TMD11 of hRFC were involved in substrate binding, whereas those in TMD12 were not (Hou, Z., Stapels, S. E., Haska, C. L., and Matherly, L. H. (2005) J. Biol. Chem. 280, 36206 -36213). In this study, 232 Cys-substituted mutants spanning TMDs 1-10 and conserved stretches within the TMD6 -7 (residues 204 -217) and TMD10 -11 connecting loop domains were transiently expressed in hRFC-null HeLa cells. All Cys-substituted mutants showed moderate to high levels of expression on Western blots, and only nine mutants including R133C, I134C, A135C, Y136C, S138C, G163C, Y281C, R373C, and S313C were inactive for methotrexate transport. MTSES did not inhibit transport by any of the mutants in TMDs 1, 3, 6, and 9 or for positions 204 -217. Whereas most of the mutants in TMDs 2, 4, 5, 7, 8, and 10, and in the TMD10 -11 connecting loop were insensitive to MTSES, this reagent inhibited methotrexate transport (25-75%) by 26 mutants in these TMDs. For 13 of these (Y126C, S137C, V160C, S168C, W274C, S278C, V284C, V288C, A311C, T314C, Y376C, Q377C, and V380C), inhibition was prevented by leucovorin, another hRFC substrate. Combined with our previous findings, these results implicate amino acids in TMDs 4, 5, 7, 8, 10, and 11, but not in TMDs 1, 2, 3, 6, 9, or 12, as important structural or functional components of the putative hydrophilic cavity for binding of anionic folate substrates.Folic acid is the fully oxidized monoglutamyl form of the water-soluble vitamin that is used in dietary supplements and in fortified foods. In cells and tissues, folic acid is converted to coenzyme forms required in one-carbon transfer reactions involved in the biosynthesis of nucleotides and the amino acids, serine and methionine (1). Thus, folates are critical for cell proliferation and tissue regeneration. Further, folic acid supplementation has been credited with providing a beneficial role in preventing a range of disorders, including cardiovascular disease, neural tube defects, and cancer (2, 3).Because folates cannot be synthesized de novo in mammalian cells, external dietary sources are essential. Reflecting their anionic character, the natural folates show only a minimal capacity to cross biological membranes by diffusion alone. Accordingly, sophisticated membrane transport systems have evolved to facilitate uptake of folate cofactors by mammalian cells and tissues, of which the ubiquitously expressed reduced folate carrier (RFC) 2 (4) appears to predominate (5). RFC levels are also important determinants of the anti-tumor activities of chemotherapy drugs such as methotrexate (Mtx) and the newer antifolates, pemetrexed (Alimta) and raltitrexed (Tomudex). Moreover, loss of ...