The homeostasis of intracellular pH (pH i) affects many cellular functions. Our previous study has established a functional and molecular model of the active pH i regulators in human induced pluripotent stem cells (hiPSCs). The aims of the present study were to further quantify passive pH i buffering power (β) and to investigate the effects of extracellular pH and Na +-H + exchanger 1 (NHE1) activity on pluripotency in hiPSCs. pH i was detected by microspectrofluorimetry with pH-sensitive dye-BCECF. Western blot, immunofluorescence staining, and flow cytometry were used to detect protein expression and pluripotency. Our study in hiPSCs showed that (a) the value of total (β tot), intrinsic (β i), and CO 2-dependent (β CO2) buffering power all increased while pH i increased; (b) during the spontaneous differentiation for 4 days, the β values of β tot and β CO2 changed in a tendency of decrease, despite the absence of statistical significance; (c) an acidic cultured environment retained pluripotency and further upregulated expression and activity of NHE1 during spontaneous differentiation; (d) inhibition on NHE1 activity promoted the loss of pluripotency. In conclusion, we, for the first time, established a quantitative model of passive β during differentiation and demonstrated that maintenance of NHE1 at a higher level was of critical importance for pluripotency retention in hiPSCs.