We have measured, by reverse transcription and real-time quantitative PCR, the steady-state levels of the mitochondrial and nuclear transcripts encoding several subunits of the human oxidative phosphorylation (OXPHOS) system, in different normal tissues (muscle, liver, trachea, and kidney) and in cultured cells (normal fibroblasts, 143B osteosarcoma cells, 143B206 0 cells). Five mitochondrial transcripts and nine nuclear transcripts were assessed. The measured amounts of these OXPHOS transcripts in muscle samples corroborated data obtained by others using the serial analysis of gene expression (SAGE) method to appraise gene expression in the same type of tissue. Steady-state levels for all the transcripts were found to range over more than two orders of magnitude. Most of the time, the mitochondrial H-strand transcripts were present at higher levels than the nuclear transcripts. The mitochondrial L-strand transcript ND6 was usually present at a low level. Cultured 143B cells contained significantly reduced amounts of mitochondrial transcripts in comparison with the tissue samples. In 143B206 0 cells, fully depleted of mitochondrial DNA, the levels of nuclear OXPHOS transcripts were not modified in comparison with the parental cells. This observation indicated that nuclear transcription is not coordinated with mitochondrial transcription. We also observed that in the different tissues and cells, there is a transcriptional coregulation of all the investigated nuclear genes. Nuclear OXPHOS gene expression seems to be finely regulated.[The following individual kindly provided reagents, samples, or unpublished information as indicated in the paper: G. Attardi.]Through the process of oxidative phosphorylation (OXPHOS), mitochondria provide most of the ATP to eukaryotic cells. Oxidative phosphorylation corresponds to the terminal stage of substrate oxidation in mitochondria, and is catalyzed by the OXPHOS system, which functionally associates the mitochondrial respiratory chain, composed of four complexes (complexes I, II, III, and IV), and ATP synthase (complex V) for ATP synthesis. The biogenesis of all these enzymatic complexes, except complex II, requires expression of genes located at the level of both the nuclear and the mitochondrial genomes. Mechanisms that putatively coordinate the expression of these genes are poorly understood at present.